PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761172.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 526aa MW: 58535.5 Da PI: 4.1465

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	262	308	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W++eE+el+ ++v + W+ a +++ R++++++s++++ XP_009761172.1 262 KWSEEEEELFHEVVLSNPASvgknFWNHLAIEFP-SRSREELVSYYFN 308 8***********9988778888******.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0017	259	312	IPR001005	SANT/Myb domain
CDD	cd00167	0.00724	262	308	No hit	No description
Pfam	PF00249	5.4E-6	262	308	IPR001005	SANT/Myb domain

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MVQKRSYGEE ELYEVSSKQP RHEPSCQIVS VLELSRESVA VKAYASGGDE ENSSSINPDA 60 DNELDSHNVA EALFSSGKET DMCIYGSASN SSWPTSCTSE EDIRPEAPFH ILMSPEYYYF 120 DHPFRGAAHH GEMYSSLLSD PPQKMVPIGP DFQAELPEWG AFVNQDKPYM EGMCETMCPS 180 SQAYENKLAG TSIIPMPAME LCADNGENIV ERGGECSCED IGSIRCVRLH IMEAREKLKL 240 ALGEETFFRL GFCDMGEVVA EKWSEEEEEL FHEVVLSNPA SVGKNFWNHL AIEFPSRSRE 300 ELVSYYFNAF ILRKRAEQNR LDPLHIDSDN DEWLEIVGDA AQEANMTDED EESVVESPAY 360 HNDLIGNGIH EELDKHDEDG GDATWEDYKA LNFGSRKVFT DVPESCPGEL FDSNSSYKLS 420 LQPQDQGLSN KVVKQEVQDG SCTTVAAGVT SESSLGQTNN GKRWANDITG MGSGIEHDRV 480 LGPCGGKEWD VGYLSCARNE VDLLPTRTMI EEVFGDGAWI YKSRDG

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MVQKRSYGEE ELYEVSSKQP RHEPSCQIVS VLELSRESVA VKAYASGGDE ENSSSINPDA  60
DNELDSHNVA EALFSSGKET DMCIYGSASN SSWPTSCTSE EDIRPEAPFH ILMSPEYYYF  120
DHPFRGAAHH GEMYSSLLSD PPQKMVPIGP DFQAELPEWG AFVNQDKPYM EGMCETMCPS  180
SQAYENKLAG TSIIPMPAME LCADNGENIV ERGGECSCED IGSIRCVRLH IMEAREKLKL  240
ALGEETFFRL GFCDMGEVVA EKWSEEEEEL FHEVVLSNPA SVGKNFWNHL AIEFPSRSRE  300
ELVSYYFNAF ILRKRAEQNR LDPLHIDSDN DEWLEIVGDA AQEANMTDED EESVVESPAY  360
HNDLIGNGIH EELDKHDEDG GDATWEDYKA LNFGSRKVFT DVPESCPGEL FDSNSSYKLS  420
LQPQDQGLSN KVVKQEVQDG SCTTVAAGVT SESSLGQTNN GKRWANDITG MGSGIEHDRV  480
LGPCGGKEWD VGYLSCARNE VDLLPTRTMI EEVFGDGAWI YKSRDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761172.1	0.0	PREDICTED: uncharacterized protein LOC104213369 isoform X2
TrEMBL	A0A1U7UYS3	0.0	A0A1U7UYS3_NICSY; uncharacterized protein LOC104213369 isoform X2
STRING	XP_009761171.1	0.0	(Nicotiana sylvestris)