PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009761171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 527aa MW: 58634.6 Da PI: 4.1465 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 263 | 309 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W++eE+el+ ++v + W+ a +++ R++++++s++++ XP_009761171.1 263 KWSEEEEELFHEVVLSNPASvgknFWNHLAIEFP-SRSREELVSYYFN 309 8*************9988778888**********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0017 | 260 | 313 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-6 | 263 | 309 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00719 | 263 | 309 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MVQKRSYGEE ELYEVSSKQP RHEPSCQIVS VLELSRESVA VKAYASVGGD EENSSSINPD 60 ADNELDSHNV AEALFSSGKE TDMCIYGSAS NSSWPTSCTS EEDIRPEAPF HILMSPEYYY 120 FDHPFRGAAH HGEMYSSLLS DPPQKMVPIG PDFQAELPEW GAFVNQDKPY MEGMCETMCP 180 SSQAYENKLA GTSIIPMPAM ELCADNGENI VERGGECSCE DIGSIRCVRL HIMEAREKLK 240 LALGEETFFR LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASVGKNFWNH LAIEFPSRSR 300 EELVSYYFNA FILRKRAEQN RLDPLHIDSD NDEWLEIVGD AAQEANMTDE DEESVVESPA 360 YHNDLIGNGI HEELDKHDED GGDATWEDYK ALNFGSRKVF TDVPESCPGE LFDSNSSYKL 420 SLQPQDQGLS NKVVKQEVQD GSCTTVAAGV TSESSLGQTN NGKRWANDIT GMGSGIEHDR 480 VLGPCGGKEW DVGYLSCARN EVDLLPTRTM IEEVFGDGAW IYKSRDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761171.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213369 isoform X1 | ||||
TrEMBL | A0A1U7V892 | 0.0 | A0A1U7V892_NICSY; uncharacterized protein LOC104213369 isoform X1 | ||||
STRING | XP_009761171.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1514 | 16 | 25 |