PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009761066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 291aa MW: 33411.2 Da PI: 8.0719 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.5 | 6.4e-10 | 218 | 255 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + XP_009761066.1 218 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 255 664459******************************98 PP | |||||||
2 | BELL | 103.4 | 1.6e-33 | 80 | 151 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+el k+ kL++lleeV++rY+qy++ ++ + s Fe++ag g+ kpYt+lAl+a+SrhF cL+dai++qi XP_009761066.1 80 ERHELYVKIMKLITLLEEVERRYEQYYQHMEEITSTFEVIAGFGAGKPYTALALQAMSRHFSCLRDAIISQI 151 799********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-26 | 12 | 149 | IPR006563 | POX domain |
Pfam | PF07526 | 2.4E-37 | 19 | 147 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.985 | 196 | 259 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 198 | 272 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-9 | 199 | 263 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-10 | 199 | 260 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-18 | 204 | 267 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-17 | 216 | 255 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MNQSFSNVCG TESFVAATGN SKYLKPTQSL LEELVCAGGK TIDLSNEKFI RRLSRNSKKG 60 SLSLRAMLKA EIPSNELFNE RHELYVKIMK LITLLEEVER RYEQYYQHME EITSTFEVIA 120 GFGAGKPYTA LALQAMSRHF SCLRDAIISQ IYVIRQKMPR DVPKISSGLS HLSLFEKETL 180 QNRMSLQQLG IIQSNRQAWR PIRGLPETSV AILRSWLFEH FLHPYPNDSE KLMLASQTGL 240 SKNQVSNWFI NARVRLWKPM IEEMYKEEFA DSSVDSDPFL NREGVTDSAE E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 205 | 263 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 205 | 263 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-16 | 205 | 263 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-16 | 205 | 263 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 3e-16 | 205 | 263 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-16 | 205 | 263 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF375965 | 0.0 | AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761064.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 isoform X1 | ||||
Refseq | XP_009761065.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 isoform X1 | ||||
Refseq | XP_009761066.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 isoform X2 | ||||
Refseq | XP_016434169.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Refseq | XP_016434177.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 1e-100 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A1S3X2L3 | 0.0 | A0A1S3X2L3_TOBAC; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A1U7V7X0 | 0.0 | A0A1U7V7X0_NICSY; BEL1-like homeodomain protein 11 isoform X2 | ||||
TrEMBL | A0A1U7VFF6 | 0.0 | A0A1U7VFF6_NICSY; BEL1-like homeodomain protein 11 isoform X1 | ||||
STRING | XP_009761064.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 3e-95 | BEL1-like homeodomain 11 |