PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761063.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 622aa MW: 69906.8 Da PI: 5.3111

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	411	448	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + XP_009761063.1 411 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 448 554459******************************88 PP
2	BELL	123	1.3e-39	277	348	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er++l++k +kL s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi XP_009761063.1 277 ERHDLESKMTKLFSMLDEVDRRYKEYYQQMQAVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 348 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.8E-56	201	346	IPR006563	POX domain
Pfam	PF07526	2.6E-47	207	344	IPR006563	POX domain
PROSITE profile	PS50071	12.341	389	452	IPR001356	Homeobox domain
SMART	SM00389	4.4E-10	392	456	IPR001356	Homeobox domain
CDD	cd00086	2.39E-12	392	453	No hit	No description
SuperFamily	SSF46689	2.69E-17	393	458	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	395	458	IPR009057	Homeodomain-like
Pfam	PF05920	2.0E-17	409	448	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MSAYYSNLSN QREVLPMSFL PDQKFDSYHS AGLSDSSIHL NQHSSTVSYS ELPAQSYGEV 60 QTIRGKDEML FIPPTSESGS MQPIGRSVNA APNFLDNSVM MDPRSFPTKQ LFVPNIEQSL 120 QNQGLSLSLG TQVPPSLHVY SYQDDYTNSS LSSLVGTHVL HSEQGSEDKE SKVAEYLSFD 180 LARGTRAANN PQNSMSLRNM NSGAHSIYNS KYLKAAQDLL DEVVNVQEAL KQSDRLRNFN 240 LLGQDRSEEA DLKSSCSASG ISGDQNNSIK GELSPAERHD LESKMTKLFS MLDEVDRRYK 300 EYYQQMQAVV SSFEMVAGLG AAKPYTSLAL KTISRQFRCL RDAIKKQIQV TRRSLGEQGD 360 SQGERLYRLR YVDQQLRQQR SLQQFGMMRQ PWRPQRGLPE TAVSVLRAWL FEHFLHPYPK 420 DSEKIMLARQ TGLTRSQVAN WFINARVRLW KPMIEDMYKE EFGEAEAGSG ASPDRAPEES 480 KEKSIAENTG EEIPESFTTP AVNCSHLDPS DESSNVVTNV QNNSFITKFS FQDGAYEHEK 540 IDAVNTYHAS MLGDIMGNQV SLALRLQNSQ IDQQPISGRT QLAEDDKTGS TLDISKGEYY 600 YIDPVNQQER FSGPHLLSDF VA

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MSAYYSNLSN QREVLPMSFL PDQKFDSYHS AGLSDSSIHL NQHSSTVSYS ELPAQSYGEV  60
QTIRGKDEML FIPPTSESGS MQPIGRSVNA APNFLDNSVM MDPRSFPTKQ LFVPNIEQSL  120
QNQGLSLSLG TQVPPSLHVY SYQDDYTNSS LSSLVGTHVL HSEQGSEDKE SKVAEYLSFD  180
LARGTRAANN PQNSMSLRNM NSGAHSIYNS KYLKAAQDLL DEVVNVQEAL KQSDRLRNFN  240
LLGQDRSEEA DLKSSCSASG ISGDQNNSIK GELSPAERHD LESKMTKLFS MLDEVDRRYK  300
EYYQQMQAVV SSFEMVAGLG AAKPYTSLAL KTISRQFRCL RDAIKKQIQV TRRSLGEQGD  360
SQGERLYRLR YVDQQLRQQR SLQQFGMMRQ PWRPQRGLPE TAVSVLRAWL FEHFLHPYPK  420
DSEKIMLARQ TGLTRSQVAN WFINARVRLW KPMIEDMYKE EFGEAEAGSG ASPDRAPEES  480
KEKSIAENTG EEIPESFTTP AVNCSHLDPS DESSNVVTNV QNNSFITKFS FQDGAYEHEK  540
IDAVNTYHAS MLGDIMGNQV SLALRLQNSQ IDQQPISGRT QLAEDDKTGS TLDISKGEYY  600
YIDPVNQQER FSGPHLLSDF VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	398	455	5	62	Homeobox protein Meis2
3k2a_B	2e-16	398	455	5	62	Homeobox protein Meis2
4xrs_A	1e-16	398	455	1	58	Homeobox protein Meis1
4xrs_B	1e-16	398	455	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761063.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	Q9FXG8	1e-111	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	A0A1U7V3U8	0.0	A0A1U7V3U8_NICSY; BEL1-like homeodomain protein 7
STRING	XP_009761063.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11258	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-100	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]