PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009761009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 53167.7 Da PI: 6.0021 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 476.8 | 1.1e-145 | 47 | 468 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA++vssg+le+a+ +L ++s+l+sp+gd+mqR+a+yfteALa r++rs++++yka++++e s +se + ++k+f+e +P+lk+++ XP_009761009.1 47 LIHLLLACANHVSSGNLENANIALDHISQLSSPNGDTMQRIASYFTEALADRILRSWPGIYKAFRSTELS--VVSEDILVRKMFFEFFPFLKVAF 139 689*************************************************************999998..69********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++NqaI+ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lR+Tgv++ +ke l +++ L++ Ae+l++pf+fn v+++ledl+ XP_009761009.1 140 VVTNQAIVEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRLTGVHQ----QKEVLDQMAYVLTEEAEKLDIPFQFNQ-VVSQLEDLD 229 ******************************************************....9**************************.799****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230 +e+Lrvk+gEala+++v+qlh+ll +++++++ + d +L++ XP_009761009.1 230 VEKLRVKTGEALAISSVMQLHTLLghdnepqkksplpfkhsngvnlhrafinqntlgellekdmghmpngyspsndtasSSPLCSTTKMDGFLNA 324 ***************************************************************************9988777888889******* PP GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 +++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le+ lpr+s er kvE++llg+ei+n++aceg er+erhe+lekW +r++ aGF+ XP_009761009.1 325 LWGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESALPRTSLERLKVEKMLLGEEIKNIIACEGIERKERHEKLEKWFQRFDVAGFG 419 *********************************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vpls++a+ qa++ll+ ++s+gy+++ee+g++v++W+dr+L+s+S+Wr XP_009761009.1 420 NVPLSYYAMLQARRLLQSYNSEGYKIKEENGCVVICWHDRALFSISSWR 468 ************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.439 | 21 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-143 | 47 | 468 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPIQIFP MTSLSPGFGS SNQWLKELKS EERGLYLIHL LLACANHVSS 60 GNLENANIAL DHISQLSSPN GDTMQRIASY FTEALADRIL RSWPGIYKAF RSTELSVVSE 120 DILVRKMFFE FFPFLKVAFV VTNQAIVEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP 180 EGPPHLRLTG VHQQKEVLDQ MAYVLTEEAE KLDIPFQFNQ VVSQLEDLDV EKLRVKTGEA 240 LAISSVMQLH TLLGHDNEPQ KKSPLPFKHS NGVNLHRAFI NQNTLGELLE KDMGHMPNGY 300 SPSNDTASSS PLCSTTKMDG FLNALWGLSP KVMVVTEQDS NHNGTTLMER LSESLHYYAA 360 LFDCLESALP RTSLERLKVE KMLLGEEIKN IIACEGIERK ERHEKLEKWF QRFDVAGFGN 420 VPLSYYAMLQ ARRLLQSYNS EGYKIKEENG CVVICWHDRA LFSISSWRCR K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-41 | 29 | 470 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761009.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1U7VFC0 | 0.0 | A0A1U7VFC0_NICSY; scarecrow-like protein 3 | ||||
STRING | XP_009761009.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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