PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 1088aa MW: 123362 Da PI: 9.5076 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6.2e-12 | 27 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++rl++p +fa+++ ++ ++ + le ++g++Wev++ ++g++ l+ GW++F + + g f++F ++ rs f +v+ XP_009760931.1 27 FFKII--LSQHERSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113 67777..78889999***********5454444..***************..999999**************************999999..999 PP EE- CS B3 96 vfr 98 +f+ XP_009760931.1 114 IFD 116 987 PP | |||||||
2 | B3 | 40.5 | 4.7e-13 | 280 | 360 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ps+v++ +l+++ kfa+++ +++ + l+l+ + sW+vk+++ + +++ Wk Fv +n+Lk gD++vF++++ + XP_009760931.1 280 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 360 5789*******************887545..7***************8866655554....*******************8764433 PP | |||||||
3 | B3 | 47 | 4.5e-15 | 531 | 620 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ps+v+k +l ++ +f++++ ++ + +l+ + sW+v++ + ++ +++GWk Fv +n+Lk gD++vF++++ ++ + v++f XP_009760931.1 531 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 620 6789*******************777555..69**************..334444559**********************99877776777776 PP | |||||||
4 | B3 | 34.7 | 3.1e-11 | 794 | 882 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ps+v++ rl + a+++ + +++ l+l + sW+vk+ k++ ++ + Wk Fv +n+Lk gD++vF+l++ ++ l v++fr+ XP_009760931.1 794 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 882 66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP | |||||||
5 | B3 | 49.6 | 7.2e-16 | 993 | 1079 | 7 | 94 |
.-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ps+v++ +l++ + a+++ k++ +++l+++s rsW vk+ + + lt+GWkeFv +n+Lkeg ++vF++++rs+ ++v XP_009760931.1 993 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1079 44444445567899999999999766444..8***************..55555677***********************88776664444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-18 | 19 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.82E-11 | 25 | 116 | No hit | No description |
PROSITE profile | PS50863 | 11.166 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-8 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-16 | 270 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-15 | 270 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.23E-15 | 275 | 368 | No hit | No description |
SMART | SM01019 | 2.8E-9 | 276 | 370 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.305 | 277 | 370 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 279 | 359 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 520 | 623 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-19 | 521 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.84E-15 | 526 | 621 | No hit | No description |
SMART | SM01019 | 6.8E-11 | 527 | 623 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 528 | 623 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-12 | 530 | 620 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 780 | 881 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-16 | 781 | 881 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.123 | 788 | 883 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-6 | 791 | 883 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.27E-13 | 792 | 881 | No hit | No description |
Pfam | PF02362 | 1.5E-8 | 794 | 881 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 979 | 1083 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-18 | 982 | 1083 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-14 | 985 | 1082 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 990 | 1085 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-9 | 990 | 1085 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-14 | 997 | 1081 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1088 aa Download sequence Send to blast |
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHERSRL RIPEDFASRY CKNMLNPVYL 60 EVPTGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTIFDLSAS 120 EIEYPYSSAH GIHTPISYSH ETRHAPERDQ SESDDSVEIL EGIPRSQKAN PIIPDMVENS 180 VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEDVASFTRE GQKSSEGCCT 240 HMLQSKIVYD ENKTVMDKER AIAYQRAKGF KSKNPFVISF MQPSYVFSPF NLSMSLKFAR 300 KYFLENYRNL VLRVPGRGSW SVKCTFGTTN AKIFWKAFVM DNKLKPGDVC VFEVIKGAKL 360 LMDITIFPAA GSTPMHKIAG EVPWVSDKSV PFSQSRIVQT KNLKQRRGGV CGFNSKVKAE 420 HGEGIGIEHS FEILGHCPLG QYRKITRLER DAEDDVPFDT HTKNIKVETS QEDVALPSFR 480 KTKKSGESCR MHTQQTTIVC GKNKTVMDKE RAMAYQRAKA FKSKNPFIIS FMQPSYVSKP 540 YNLNISATFI RKYFRDEYSN FVLRVPGRGS WSVECFMGTS KAQIRSGWKA FVLDNKLKHG 600 DVCVFEVIKV TKLLMDVTIF PATGSTPMLK IAGEVTGVSD SKRKIIKTDI YVPCSPPKVV 660 HTNRLKQRRG EEHDEGTGIE SSVEILGHCP LGHDSKIKRL EVETEDDVSI DIHAKNIKVA 720 NTQEDVASPS FTRKTKNFEF LYEESGESCR MDKQQSKMVY DKNTTVLDKE RTVAYQRAKD 780 FKSENPYVMY FMQPSYVSTP YRLDITFLLA RKYLWEKCGF LVLHVPGRGS WSVKYVLGKS 840 KTKICFYWKA FVLDNKLKFG DVCVFELIKG TKPILDVTIF RTAESKPVHK IDGKLSGVSD 900 CKNKTIKTEN SVPCSQSKIV RSRKLNLEKR QNGNSDGFTS KTKEELSEDA GKHVQQSKSS 960 CKGSAVAKEM VLAYQRAKAF TSENPFFICF MQPSYVSSAS GPMQLSITLP IARKFFATKH 1020 SDVILQNSSK RSWAVKCSLG TVNAKLTSGW KEFVLDNDLK EGHICVFERV SRSKLLFNVI 1080 IFTSAEGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-15 | 501 | 620 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-15 | 501 | 620 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760931.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213184 isoform X4 | ||||
TrEMBL | A0A1U7V7I0 | 0.0 | A0A1U7V7I0_NICSY; uncharacterized protein LOC104213184 isoform X4 | ||||
STRING | XP_009760928.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-32 | B3 family protein |