PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760929.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 1094aa    MW: 124219 Da    PI: 9.3553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.3e-1227116198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+    + ++++rl++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v+
  XP_009760929.1  27 FFKII--LSQHERSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113
                     67777..78889999***********5454444..***************..999999**************************999999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_009760929.1 114 IFD 116
                     987 PP
2B340.54.8e-13280360490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ps+v++  +l+++ kfa+++ +++ +   l+l+ +   sW+vk+++  +  +++    Wk Fv +n+Lk gD++vF++++  + 
  XP_009760929.1 280 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 360
                     5789*******************887545..7***************8866655554....*******************8764433 PP
3B3474.5e-15537626497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + ps+v+k  +l ++ +f++++  ++ +    +l+ +   sW+v++    + ++  +++GWk Fv +n+Lk gD++vF++++ ++  + v++f
  XP_009760929.1 537 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 626
                     6789*******************777555..69**************..334444559**********************99877776777776 PP
4B334.73.1e-11800888799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ps+v++  rl +    a+++  + +++  l+l  +   sW+vk+   k++ ++ +   Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009760929.1 800 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 888
                     66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP
5B349.67.3e-169991085794
                      .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3    7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                      ps+v++     +l++  + a+++   k++  +++l+++s rsW vk+  + +     lt+GWkeFv +n+Lkeg ++vF++++rs+  ++v
  XP_009760929.1  999 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1085
                      44444445567899999999999766444..8***************..55555677***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1819118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1721118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-1025116No hitNo description
PROSITE profilePS5086311.16625118IPR003340B3 DNA binding domain
PfamPF023621.9E-827116IPR003340B3 DNA binding domain
SMARTSM010192.6E-828118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-16270364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-15270361IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-15275368No hitNo description
SMARTSM010192.8E-9276370IPR003340B3 DNA binding domain
PROSITE profilePS508639.305277370IPR003340B3 DNA binding domain
PfamPF023621.8E-10279359IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-21526629IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-19527627IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-15532627No hitNo description
SMARTSM010196.8E-11533629IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773534629IPR003340B3 DNA binding domain
PfamPF023626.2E-12536626IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16786887IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-16787887IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123794889IPR003340B3 DNA binding domain
SMARTSM010191.8E-6797889IPR003340B3 DNA binding domain
CDDcd100176.00E-13798887No hitNo description
PfamPF023621.5E-8800887IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-229851089IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-189881089IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-149911088No hitNo description
PROSITE profilePS5086312.4789961091IPR003340B3 DNA binding domain
SMARTSM010196.9E-99961091IPR003340B3 DNA binding domain
PfamPF023629.1E-1410031087IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHERSRL RIPEDFASRY CKNMLNPVYL  60
EVPTGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTIFDLSAS  120
EIEYPYSSAH GIHTPISYSH ETRHAPERDQ SESDDSVEIL EGIPRSQKAN PIIPDMVENS  180
VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEDVASFTRE GQKSSEGCCT  240
HMLQSKIVYD ENKTVMDKER AIAYQRAKGF KSKNPFVISF MQPSYVFSPF NLSMSLKFAR  300
KYFLENYRNL VLRVPGRGSW SVKCTFGTTN AKIFWKAFVM DNKLKPGDVC VFEVIKGAKL  360
LMDITIFPAA GSTPMHKIAG EVPWVSDKSV PFSQSRIVQT KNLKQRRGGV CGFNSKVKEH  420
GEGIGIEHSF EILGHCPLGQ YRKITRLERD AEDDVPFDTH TKNIKVETSQ EDVALPSFRK  480
TKNFEFLFEE SGESCRMHTQ QTTIVCGKNK TVMDKERAMA YQRAKAFKSK NPFIISFMQP  540
SYVSKPYNLN ISATFIRKYF RDEYSNFVLR VPGRGSWSVE CFMGTSKAQI RSGWKAFVLD  600
NKLKHGDVCV FEVIKVTKLL MDVTIFPATG STPMLKIAGE VTGVSDSKRK IIKTDIYVPC  660
SPPKVVHTNR LKQRRGEEHD EGTGIESSVE ILGHCPLGHD SKIKRLEVET EDDVSIDIHA  720
KNIKVANTQE DVASPSFTRK TKNFEFLYEE SGESCRMDKQ QSKMVYDKNT TVLDKERTVA  780
YQRAKDFKSE NPYVMYFMQP SYVSTPYRLD ITFLLARKYL WEKCGFLVLH VPGRGSWSVK  840
YVLGKSKTKI CFYWKAFVLD NKLKFGDVCV FELIKGTKPI LDVTIFRTAE SKPVHKIDGK  900
LSGVSDCKNK TIKTENSVPC SQSKIVRSRK LNLEKRQNGN SDGFTSKTKE ELSEDAGKHV  960
QQSKSSCKGS AVAKEMVLAY QRAKAFTSEN PFFICFMQPS YVSSASGPMQ LSITLPIARK  1020
FFATKHSDVI LQNSSKRSWA VKCSLGTVNA KLTSGWKEFV LDNDLKEGHI CVFERVSRSK  1080
LLFNVIIFTS AEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1550762622140B3 domain-containing transcription factor VRN1
4i1k_B2e-1550762622140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760929.10.0PREDICTED: uncharacterized protein LOC104213184 isoform X2
TrEMBLA0A1U7VF330.0A0A1U7VF33_NICSY; uncharacterized protein LOC104213184 isoform X2
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein