PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009760928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1095aa MW: 124290 Da PI: 9.3553 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.3e-12 | 27 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++rl++p +fa+++ ++ ++ + le ++g++Wev++ ++g++ l+ GW++F + + g f++F ++ rs f +v+ XP_009760928.1 27 FFKII--LSQHERSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113 67777..78889999***********5454444..***************..999999**************************999999..999 PP EE- CS B3 96 vfr 98 +f+ XP_009760928.1 114 IFD 116 987 PP | |||||||
2 | B3 | 40.5 | 4.8e-13 | 280 | 360 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ps+v++ +l+++ kfa+++ +++ + l+l+ + sW+vk+++ + +++ Wk Fv +n+Lk gD++vF++++ + XP_009760928.1 280 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 360 5789*******************887545..7***************8866655554....*******************8764433 PP | |||||||
3 | B3 | 47 | 4.5e-15 | 538 | 627 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ps+v+k +l ++ +f++++ ++ + +l+ + sW+v++ + ++ +++GWk Fv +n+Lk gD++vF++++ ++ + v++f XP_009760928.1 538 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 627 6789*******************777555..69**************..334444559**********************99877776777776 PP | |||||||
4 | B3 | 34.7 | 3.1e-11 | 801 | 889 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ps+v++ rl + a+++ + +++ l+l + sW+vk+ k++ ++ + Wk Fv +n+Lk gD++vF+l++ ++ l v++fr+ XP_009760928.1 801 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 889 66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP | |||||||
5 | B3 | 49.6 | 7.3e-16 | 1000 | 1086 | 7 | 94 |
.-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ps+v++ +l++ + a+++ k++ +++l+++s rsW vk+ + + lt+GWkeFv +n+Lkeg ++vF++++rs+ ++v XP_009760928.1 1000 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1086 44444445567899999999999766444..8***************..55555677***********************88776664444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-18 | 19 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-10 | 25 | 116 | No hit | No description |
PROSITE profile | PS50863 | 11.166 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-8 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-16 | 270 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-15 | 270 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.78E-15 | 275 | 368 | No hit | No description |
SMART | SM01019 | 2.8E-9 | 276 | 370 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.305 | 277 | 370 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 279 | 359 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 527 | 630 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-19 | 528 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.56E-15 | 533 | 628 | No hit | No description |
SMART | SM01019 | 6.8E-11 | 534 | 630 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 535 | 630 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-12 | 537 | 627 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 787 | 888 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-16 | 788 | 888 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.123 | 795 | 890 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-6 | 798 | 890 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.96E-13 | 799 | 888 | No hit | No description |
Pfam | PF02362 | 1.5E-8 | 801 | 888 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 986 | 1090 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-18 | 989 | 1090 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.20E-14 | 992 | 1089 | No hit | No description |
SMART | SM01019 | 6.9E-9 | 997 | 1092 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 997 | 1092 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-14 | 1004 | 1088 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1095 aa Download sequence Send to blast |
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHERSRL RIPEDFASRY CKNMLNPVYL 60 EVPTGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTIFDLSAS 120 EIEYPYSSAH GIHTPISYSH ETRHAPERDQ SESDDSVEIL EGIPRSQKAN PIIPDMVENS 180 VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEDVASFTRE GQKSSEGCCT 240 HMLQSKIVYD ENKTVMDKER AIAYQRAKGF KSKNPFVISF MQPSYVFSPF NLSMSLKFAR 300 KYFLENYRNL VLRVPGRGSW SVKCTFGTTN AKIFWKAFVM DNKLKPGDVC VFEVIKGAKL 360 LMDITIFPAA GSTPMHKIAG EVPWVSDKSV PFSQSRIVQT KNLKQRRGGV CGFNSKVKAE 420 HGEGIGIEHS FEILGHCPLG QYRKITRLER DAEDDVPFDT HTKNIKVETS QEDVALPSFR 480 KTKNFEFLFE ESGESCRMHT QQTTIVCGKN KTVMDKERAM AYQRAKAFKS KNPFIISFMQ 540 PSYVSKPYNL NISATFIRKY FRDEYSNFVL RVPGRGSWSV ECFMGTSKAQ IRSGWKAFVL 600 DNKLKHGDVC VFEVIKVTKL LMDVTIFPAT GSTPMLKIAG EVTGVSDSKR KIIKTDIYVP 660 CSPPKVVHTN RLKQRRGEEH DEGTGIESSV EILGHCPLGH DSKIKRLEVE TEDDVSIDIH 720 AKNIKVANTQ EDVASPSFTR KTKNFEFLYE ESGESCRMDK QQSKMVYDKN TTVLDKERTV 780 AYQRAKDFKS ENPYVMYFMQ PSYVSTPYRL DITFLLARKY LWEKCGFLVL HVPGRGSWSV 840 KYVLGKSKTK ICFYWKAFVL DNKLKFGDVC VFELIKGTKP ILDVTIFRTA ESKPVHKIDG 900 KLSGVSDCKN KTIKTENSVP CSQSKIVRSR KLNLEKRQNG NSDGFTSKTK EELSEDAGKH 960 VQQSKSSCKG SAVAKEMVLA YQRAKAFTSE NPFFICFMQP SYVSSASGPM QLSITLPIAR 1020 KFFATKHSDV ILQNSSKRSW AVKCSLGTVN AKLTSGWKEF VLDNDLKEGH ICVFERVSRS 1080 KLLFNVIIFT SAEGM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-15 | 508 | 627 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-15 | 508 | 627 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760928.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213184 isoform X1 | ||||
TrEMBL | A0A1U7V3F9 | 0.0 | A0A1U7V3F9_NICSY; uncharacterized protein LOC104213184 isoform X1 | ||||
STRING | XP_009760928.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-32 | B3 family protein |