PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760864.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 227aa    MW: 26227.5 Da    PI: 8.1367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.8e-25116177159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDg++WrKYGqK++ ++++pr+Y+rCt +   gC++ k+v+r +e+p ++ +tY g+H+++
  XP_009760864.1 116 VDDGHAWRKYGQKHILNAKYPRNYFRCTNKfdqGCEANKQVQRIQENPPLFRVTYYGHHTCK 177
                     59**************************99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-26102177IPR003657WRKY domain
PROSITE profilePS5081120.518111174IPR003657WRKY domain
SuperFamilySSF1182904.97E-25112178IPR003657WRKY domain
SMARTSM007741.3E-37116178IPR003657WRKY domain
PfamPF031061.5E-24117177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEPENYTQSR LEKVTEKLNR GRELTRRLRE MIKKPEARAG DGSVILTEEL VGKIMSSFSE  60
TLSILRSNEC SEVSQILKST EDSSGSCKTS SLKDRRGHYK RRKTLETTIN ETSTLVDDGH  120
AWRKYGQKHI LNAKYPRNYF RCTNKFDQGC EANKQVQRIQ ENPPLFRVTY YGHHTCKTFP  180
KVSQMICDSP TDEDSSVLLN FNSTSNHHHF LDLMEGTVDF VDLSFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22116177869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1937710.0AF193771.1 Nicotiana tabacum DNA-binding protein 4 (WRKY4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760864.11e-171PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U7VEW31e-170A0A1U7VEW3_NICSY; probable WRKY transcription factor 70
STRINGXP_009760864.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-40WRKY DNA-binding protein 70