PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36906.8 Da PI: 4.972 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.9 | 4.8e-54 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rdkky++g+r+nratksgyWkatgkd++v+ XP_009760809.1 6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDKKYPNGSRTNRATKSGYWKATGKDRKVT 99 79****************************.99**************95344555788************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ e+vg +ktLvfy+grap g +tdWvmheyrl XP_009760809.1 100 CHQPEVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 134 *********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-61 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.396 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-30 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DMEWFFFCPR DKKYPNGSRT NRATKSGYWK ATGKDRKVTC HQPEVVGYRK TLVFYRGRAP 120 LGDRTDWVMH EYRLCDDVSQ GTPTFQGPFA LCRIIKRNDA SLKTSDTSVA VSNEPVVLTA 180 ETPTQTTYMS SDSNYSTPMT SPYEGTNAAN FWMSHDMILD SSKECSQGQS TRGNYLHYDF 240 PNTTLTQPND RFEVTSSSSF PSFRGEVELS GDLSSYGCVS PYSVHGNYTG FYGNDDMSYE 300 GYEGWNQANM GDFNGLWSHE DNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-53 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-53 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-53 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-53 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-53 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-53 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}. | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}. | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760809.1 | 0.0 | PREDICTED: protein ATAF2-like | ||||
Refseq | XP_016501877.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
Swissprot | O49697 | 5e-98 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
Swissprot | Q9LS24 | 7e-98 | NAC96_ARATH; NAC domain-containing protein 96 | ||||
TrEMBL | A0A1S4CKV9 | 0.0 | A0A1S4CKV9_TOBAC; NAC domain-containing protein 86-like | ||||
TrEMBL | A0A1U7VEQ2 | 0.0 | A0A1U7VEQ2_NICSY; protein ATAF2-like | ||||
STRING | XP_009760809.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6256 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-100 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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