PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 38103.7 Da PI: 8.5511 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.3e-50 | 35 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++kve+k++++ + ikevdiyk++PwdLpk +a+++ ewyfFs r++ky+++ r+nr+t sg+Wkatg dk+v+s XP_009760718.1 35 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DLIKEVDIYKHDPWDLPKGNTAGDNckEWYFFSMRERKYRNSVRPNRVTGSGFWKATGIDKPVYS 128 59***************************.99***************6433433344************************************** PP NAM 95 k....kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_009760718.1 129 TtttsQ--StdrgcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 169 866541..156666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-52 | 34 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.059 | 34 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-26 | 36 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSEKRAEKIE NMELVENIAT ATNIKAEDEE EIMQLPGFRF HPTDEELVSF YLRRKVENKR 60 IKMDLIKEVD IYKHDPWDLP KGNTAGDNCK EWYFFSMRER KYRNSVRPNR VTGSGFWKAT 120 GIDKPVYSTT TTSQSTDRGC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNWKTSNQQL 180 PNPKNSIPEA EVWTLCRIFK RTSNYKRFTP DWKQPIIEQS FGDASSKACS LQSETSDNHS 240 ININFKKMEF PHKNNNTAIG GNYQVDQRTT DYNNSQPIIT MPQSSITSSN SSFWNTSAEE 300 QYLFSDGNWD ELKSVVDLAI DPRSLFGFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 21 | 207 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 21 | 207 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 21 | 207 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 21 | 207 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-48 | 21 | 207 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 21 | 207 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 8e-47 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760718.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 1e-87 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U7V2V3 | 0.0 | A0A1U7V2V3_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
STRING | XP_009760718.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-86 | NAC domain containing protein 42 |