PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 329aa    MW: 38103.7 Da    PI: 8.5511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.3e-50351692128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pGfrFhPtdeelv++yL++kve+k++++ + ikevdiyk++PwdLpk  +a+++  ewyfFs r++ky+++ r+nr+t sg+Wkatg dk+v+s
  XP_009760718.1  35 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DLIKEVDIYKHDPWDLPKGNTAGDNckEWYFFSMRERKYRNSVRPNRVTGSGFWKATGIDKPVYS 128
                     59***************************.99***************6433433344************************************** PP

             NAM  95 k....kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                     +    +        +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_009760718.1 129 TtttsQ--StdrgcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 169
                     866541..156666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5234200IPR003441NAC domain
PROSITE profilePS5100552.05934201IPR003441NAC domain
PfamPF023658.0E-2636169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSEKRAEKIE NMELVENIAT ATNIKAEDEE EIMQLPGFRF HPTDEELVSF YLRRKVENKR  60
IKMDLIKEVD IYKHDPWDLP KGNTAGDNCK EWYFFSMRER KYRNSVRPNR VTGSGFWKAT  120
GIDKPVYSTT TTSQSTDRGC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNWKTSNQQL  180
PNPKNSIPEA EVWTLCRIFK RTSNYKRFTP DWKQPIIEQS FGDASSKACS LQSETSDNHS  240
ININFKKMEF PHKNNNTAIG GNYQVDQRTT DYNNSQPIIT MPQSSITSSN SSFWNTSAEE  300
QYLFSDGNWD ELKSVVDLAI DPRSLFGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48212071171NO APICAL MERISTEM PROTEIN
1ut4_B2e-48212071171NO APICAL MERISTEM PROTEIN
1ut7_A2e-48212071171NO APICAL MERISTEM PROTEIN
1ut7_B2e-48212071171NO APICAL MERISTEM PROTEIN
4dul_A2e-48212071171NAC domain-containing protein 19
4dul_B2e-48212071171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754468e-47HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760718.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK551e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U7V2V30.0A0A1U7V2V3_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_009760718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]