PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009760419.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 329aa MW: 36626.4 Da PI: 5.7273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009760419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.8	2.5e-15	45	94	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L ++++Y+++Lq XP_009760419.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 94 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-18	41	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-22	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.84	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.82E-14	45	98	No hit	No description
Pfam	PF00010	1.0E-12	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKGVKGHREE EEEEEDEVGL KKDATPPSSS NTKDGKNNDK ASAIRSKHSV TEQRRRSKIN 60 ERFQILRDLI PHTDQKRDTA SFLLEVIQYV QYLQEKVQKH EGSYQPWSSE PTKLMPWRNS 120 HWRMQNLPAH PQALKNGSGP ESTYLGGFDE NPATVTSTVQ PNQQNLIESH PIRDVSIKAM 180 DQHNDLDNKA VATHMPLQAG MLVAVPNNSA FSDSQPRLVS DQCPNTIDAL NHHEDLTIDG 240 GTISISSPYS QGLLNSLTQA LENTGLDLSQ ATISVQIDFG KRADRGMTSG PSIAKDNENP 300 PPSGNQHMDH FGEANNDEDL DQAQKRLKI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ617158	1e-154	AJ617158.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np381.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760419.1	0.0	PREDICTED: transcription factor BIM2
Refseq	XP_016490786.1	0.0	PREDICTED: transcription factor BIM2-like
Swissprot	Q9CAA4	2e-98	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A1S4BPK1	0.0	A0A1S4BPK1_TOBAC; transcription factor BIM2-like
TrEMBL	A0A1U7VDN1	0.0	A0A1U7VDN1_NICSY; transcription factor BIM2
STRING	XP_009760419.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	9e-97	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]