PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 28099.2 Da PI: 9.4039 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.7e-39 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_009760288.1 20 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 80 5799*****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 7 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 21 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.779 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAAEIAAPNV TVEKKVRPVK DQAINCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGTLRNVPVG GGSRKNNKRS SSSSSSSQKL PDLNPNPSFS PQNPNKIIVG NSCQDLNLGF 120 QTVSHDHHQF HGVPQFLELP KMDSSNNGNN HLGSTPISAL ELLRTGIASR GFTSFITSPA 180 PPDLNTLYTS GFPFQELKPR AGSNDHAAAA LSYSNGVQEN GGARIMFPLG ADHHHHQSKG 240 QENSTAGYWN GMLGGGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760286.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_009760288.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X3 | ||||
Refseq | XP_016463171.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A1S3ZFV5 | 0.0 | A0A1S3ZFV5_TOBAC; dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A1U7V1M1 | 0.0 | A0A1U7V1M1_NICSY; dof zinc finger protein DOF2.5 isoform X3 | ||||
TrEMBL | A0A1U7V5N1 | 0.0 | A0A1U7V5N1_NICSY; dof zinc finger protein DOF2.5 isoform X1 | ||||
STRING | XP_009760286.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-52 | Dof family protein |