PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 732aa MW: 81104.5 Da PI: 9.6829 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.4 | 1.2e-11 | 17 | 70 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 rW t+E++ll++av+++G+++W+++a +++ +++ +c++++++++ XP_009760270.1 17 PRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstapaRLLSPHNCRLKYLDLK 70 59************************************889*********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.4E-5 | 15 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-5 | 18 | 70 | No hit | No description |
Pfam | PF00249 | 6.6E-11 | 18 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF47370 | 3.92E-17 | 332 | 446 | IPR001487 | Bromodomain |
SMART | SM00297 | 4.4E-16 | 337 | 446 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.8E-15 | 344 | 446 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.36E-14 | 351 | 441 | No hit | No description |
Pfam | PF00439 | 4.9E-12 | 351 | 431 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.388 | 356 | 427 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MAKPDATVEN SSEEEEPRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPARLLSPH 60 NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS 120 IVSLQLKKQR LEEERERSLQ QTENGESKSD LAKNERRGAN DEKIEETEIG IKPEDKSSPE 180 LVADGEASEE ASDKDQQSVN ESSSTDPKHS CSLKTSAEEN EDKPEPVRTG TVKTEPLQTG 240 SIKEEPDKCA EERPVREDSC NGSSDSVEKP PIGVTMKVEP LSESAELVES VAESKGGEER 300 TKENSDVQSS VRKKVDDIVV GGCSSGDERE KENRSPAVKE IPVESQPLIA FLEKIRSHKL 360 GSMFERRLES QEAENYSNLV RQHVDLEMVQ TWLENGRYRS CKSKFFRDLL LLVSNAIVFF 420 KKNSSEFVAA KELRQLILKE ISQTKAKSYS LSDKQTSLKS ASLSQKERTK PSDSLLLKTN 480 ISGSMIVCRK RSSITAKASA SSSGGDKKRE QTITRPVEKV VVDTLQQPSQ LATNAGENRI 540 TKKRTRDRFA SGSASLNKKD SSRPNTTSIK NLAAVVDKNQ GEGESSSQHL QSKSESRNEQ 600 SNTDVKKRSA ANFLNRMKQS SSSNSGLLLD ALKSRPLSSG SKGGSDQKKN VSGTGGGRKE 660 PAFSKTHQKK EPASSKNPEA KQAKEKGSPM KKNVGRPPKR GADPSPPSSK RSREGAESAA 720 IPPKQPKKRS RR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760270.1 | 0.0 | PREDICTED: uncharacterized protein LOC104212640 | ||||
TrEMBL | A0A1U7VEL2 | 0.0 | A0A1U7VEL2_NICSY; uncharacterized protein LOC104212640 | ||||
STRING | XP_009760270.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4268 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 4e-42 | DNA-binding bromodomain-containing protein |