PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 732aa    MW: 81104.5 Da    PI: 9.6829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-111770248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      rW t+E++ll++av+++G+++W+++a +++         +++ +c++++++++
   XP_009760270.1 17 PRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstapaRLLSPHNCRLKYLDLK 70
                     59************************************889*********9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.4E-51572IPR001005SANT/Myb domain
CDDcd001672.40E-51870No hitNo description
PfamPF002496.6E-111870IPR001005SANT/Myb domain
SuperFamilySSF473703.92E-17332446IPR001487Bromodomain
SMARTSM002974.4E-16337446IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.8E-15344446IPR001487Bromodomain
CDDcd043692.36E-14351441No hitNo description
PfamPF004394.9E-12351431IPR001487Bromodomain
PROSITE profilePS5001412.388356427IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAKPDATVEN SSEEEEPRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPARLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKQR LEEERERSLQ QTENGESKSD LAKNERRGAN DEKIEETEIG IKPEDKSSPE  180
LVADGEASEE ASDKDQQSVN ESSSTDPKHS CSLKTSAEEN EDKPEPVRTG TVKTEPLQTG  240
SIKEEPDKCA EERPVREDSC NGSSDSVEKP PIGVTMKVEP LSESAELVES VAESKGGEER  300
TKENSDVQSS VRKKVDDIVV GGCSSGDERE KENRSPAVKE IPVESQPLIA FLEKIRSHKL  360
GSMFERRLES QEAENYSNLV RQHVDLEMVQ TWLENGRYRS CKSKFFRDLL LLVSNAIVFF  420
KKNSSEFVAA KELRQLILKE ISQTKAKSYS LSDKQTSLKS ASLSQKERTK PSDSLLLKTN  480
ISGSMIVCRK RSSITAKASA SSSGGDKKRE QTITRPVEKV VVDTLQQPSQ LATNAGENRI  540
TKKRTRDRFA SGSASLNKKD SSRPNTTSIK NLAAVVDKNQ GEGESSSQHL QSKSESRNEQ  600
SNTDVKKRSA ANFLNRMKQS SSSNSGLLLD ALKSRPLSSG SKGGSDQKKN VSGTGGGRKE  660
PAFSKTHQKK EPASSKNPEA KQAKEKGSPM KKNVGRPPKR GADPSPPSSK RSREGAESAA  720
IPPKQPKKRS RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760270.10.0PREDICTED: uncharacterized protein LOC104212640
TrEMBLA0A1U7VEL20.0A0A1U7VEL2_NICSY; uncharacterized protein LOC104212640
STRINGXP_009760270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.14e-42DNA-binding bromodomain-containing protein