PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760253.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 94aa    MW: 11027.3 Da    PI: 7.7614
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT +  +l+ +a + +  +   +W+  a+ +g g++++++k ++ k+
   XP_009760253.1  6 TWTHQQNKLFENALAIYDREtpdRWRNLAKAVG-GKSEEEVKRHYEKL 52
                     7*****************88*************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.917257IPR017884SANT domain
SMARTSM007174.8E-7355IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-12561IPR009057Homeodomain-like
CDDcd001674.68E-6653No hitNo description
PfamPF002492.0E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-5659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASNSTWTHQ QNKLFENALA IYDRETPDRW RNLAKAVGGK SEEEVKRHYE KLVEDIKHIE  60
SGNVALPNYN KANNGKGYNF MDDEEQRLKY LKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-28294693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760253.15e-65PREDICTED: protein RADIALIS-like 3
RefseqXP_016460726.15e-65PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1739e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3Z8K71e-63A0A1S3Z8K7_TOBAC; protein RADIALIS-like 3
TrEMBLA0A1U7V1I71e-63A0A1U7V1I7_NICSY; protein RADIALIS-like 3
STRINGXP_009760253.12e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-30RAD-like 6