PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760244.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 643aa    MW: 73795.2 Da    PI: 8.8139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07437478347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e   + +k++G++ Wk  a ++g  + + ++k+ w+ +
   XP_009760244.1 437 KWTEEEYEMVRNFHKEHGNN-WKVLADELG--KHRFHVKDTWRRL 478
                      8*****************99.********9..6788899888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-4361432IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-5364451IPR009057Homeodomain-like
SMARTSM007170.067434481IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-8436496IPR009057Homeodomain-like
CDDcd001670.00759437466No hitNo description
PROSITE profilePS500907.131437479IPR017877Myb-like domain
PfamPF139215.1E-10438496No hitNo description
Gene3DG3DSA:1.10.10.601.6E-7452491IPR009057Homeodomain-like
PROSITE profilePS500907.909480548IPR017877Myb-like domain
SMARTSM007170.18484550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-8492567IPR009057Homeodomain-like
SuperFamilySSF466893.06E-5528603IPR009057Homeodomain-like
PROSITE profilePS500907.666550603IPR017877Myb-like domain
SMARTSM0071714554605IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MVIGDEKVGM LPKQKKKSKK SNKNAATNGP GVEVADVEML NGDFSFEEEK LSVVETKKER  60
NKAKMETKTV GESDDRDIKK KKKREGGKHP GKSIKGSDED VAISVEKKKP NKLKRSHQDE  120
RELLLDAPLD TKTIAHASAS ETRDSKKVVE ALSEVSGGDA VEEIRRKKKS KKCNNNAPTR  180
GVGLTNSDVR AVEGDLSLEE EKLCVVKTRK EKDKVNKEIK AAGESEDYDV KRKKERKSRT  240
FNKDCAEAAL KNVEKKSNKL KKSCRDEQET MHHIKDGQGD IMAEVNQGDI SSPVEEIEEQ  300
SRTDNGNIRK RKKVMLGHSS EDPTHEKSEK RVRFSGHVQI FPSSGDPSDE NHETEEENLL  360
RGKRFSKLED EIVKEAVHKY IDIHNLGEEG LHKILNSRSN PEVKGCWKEI GSAIPYRPYT  420
AVYYRAQVLF RRSETRKWTE EEYEMVRNFH KEHGNNWKVL ADELGKHRFH VKDTWRRLKL  480
ANKKKGQWSQ EEYQTLFDLV NTDLKLKLSE EKKSKHGMLR DNIAWGAISD RLSTRTDATC  540
CLKWYDQLTS PMVAKGEWAD TDDYRLVDAL FELDASCIED VDWDNVLDHR PGEICRKRWN  600
QMVLHIGQHG NRSFAEQVEV LAKRYRPELV EVREAWDSKP VIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760244.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471261.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471262.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A1S4A3L00.0A0A1S4A3L0_TOBAC; transcription termination factor 1-like
TrEMBLA0A1U7VD640.0A0A1U7VD64_NICSY; transcription termination factor 1-like
STRINGXP_009760244.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-127MYB_related family protein