PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760089.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 362aa    MW: 41208 Da    PI: 6.2373
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092893232155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  XP_009760089.1 289 KWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 323
                     669*****************************885 PP
2ELK37.93.7e-13243264122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  XP_009760089.1 243 ELKNHLLRKYSGYLSSLKQELS 264
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-2099143IPR005540KNOX1
PfamPF037901.7E-22100142IPR005540KNOX1
SMARTSM012561.3E-25150201IPR005541KNOX2
PfamPF037911.5E-23154199IPR005541KNOX2
PfamPF037892.5E-10243264IPR005539ELK domain
PROSITE profilePS5121311.296243263IPR005539ELK domain
SMARTSM011883.5E-7243264IPR005539ELK domain
PROSITE profilePS5007112.924263326IPR001356Homeobox domain
SuperFamilySSF466891.67E-19264338IPR009057Homeodomain-like
SMARTSM003895.4E-13265330IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-27268329IPR009057Homeodomain-like
CDDcd000865.44E-12275327No hitNo description
PfamPF059208.5E-17283322IPR008422Homeobox KN domain
PROSITE patternPS000270301324IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENNYNQLGE NSAQRGNNFL YGGIPLLASP NSSIYGRSSG GGGDCYDQSQ AVVHPIVKTE  60
GGSTSHHHTF QYPSIIRSGY HHLTVQNHHE SESSGSEVDA LKAKIIAHPQ CSNLLDAYMD  120
CQKVGAPPEV VARLSAVRQE FEVRQRDSST DRNIAKDPEL DQFMEAYYDM LVKYREELTR  180
PLHEAMDFMR KIETQLNMLG NGPVRIFNSE DNCEGVGSSE EEQDNSGGET EIPEIDPRAE  240
DRELKNHLLR KYSGYLSSLK QELSKKKKKG KLPKDARQKL LSWWELHYKW PYPSESEKVA  300
LAETTGLDQK QINNWFINQR KRHWKPSEDM QFMVMDGLHP QNAAALYMEG HYMGEGPFRL  360
GQ
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440540.0AF544054.1 Nicotiana tabacum knotted 3 (kn3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760089.10.0PREDICTED: homeotic protein knotted-1 isoform X1
RefseqXP_016442876.10.0PREDICTED: homeotic protein knotted-1-like isoform X1
SwissprotQ413300.0KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A1S3XSE70.0A0A1S3XSE7_TOBAC; homeotic protein knotted-1-like isoform X1
TrEMBLA0A1U7VCR60.0A0A1U7VCR6_NICSY; homeotic protein knotted-1 isoform X1
STRINGXP_009760089.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-137KNOTTED-like from Arabidopsis thaliana