PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 25264.6 Da PI: 9.5987 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.3 | 4e-18 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ +r+v + R ++++KKAeELSvLCd+e+ +i+fs++ + ey XP_009760062.1 3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDERNAEY 47 889**********************************99776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-6 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.152 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-17 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-15 | 3 | 43 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.49E-15 | 3 | 51 | No hit | No description |
PRINTS | PR00404 | 1.0E-6 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-6 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DERNAEYEWP SRDKFKQLMM 60 RYLDKPLLER LKKLTTNEMF LRKEMDAKMK KIDQQKTEEK EMEQIFSQLY LGEKTIFDLD 120 KRQLIGVRNL AIKAKEKAVK RRIQLKYLQD QRLSLPFDRI LIRVAPLNVQ DQRLQLSVDD 180 PLALRLAPLN VHDQRLQLPV DDPLALRLAP PEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760062.1 | 1e-151 | PREDICTED: MADS-box transcription factor 31-like | ||||
TrEMBL | A0A1U7UVK3 | 1e-150 | A0A1U7UVK3_NICSY; MADS-box transcription factor 31-like | ||||
STRING | XP_009760062.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-13 | M-type_MADS family protein |