PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759914.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 640aa    MW: 70618.6 Da    PI: 4.6554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.5e-53281561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeelv++yL+ k++g + e+ +vi+evdi+k+ePwdLp +  v+++++ew+fF+++d+ky++g+r nrat++gyWkatgkd+++ 
  XP_009759914.1  28 LPVGYRFRPTDEELVNHYLRLKINGADSEV-SVIREVDICKLEPWDLPdMsVVESKDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRNIA 121
                     799************************999.99**************96347788999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  XP_009759914.1 122 TKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5823179IPR003441NAC domain
PROSITE profilePS5100555.64228179IPR003441NAC domain
PfamPF023651.2E-2629155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MMAVLPGDNV ISVLPVDKQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSEVSVI  60
REVDICKLEP WDLPDMSVVE SKDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
ATKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN  180
DLKQDEHVES SNLDDAELNA TVAKSPTEGD LSEAATPLAV IQALSDSDKS YAAKLPKGEM  240
YGKQLPIESH SNSCIADDTE DQMLDITSIP PDMELEKALG NFCDPSMQPL DWKIFSPLHS  300
QLQVELGSSY LQTPMNNGIG AYQKDVQFQY GTNAFDINEF LDSVIINSDE FSCEDSGQEL  360
ASHRVVAQFC GVPCAPIKDS GSCSESEAEV TQRLVEPDFF EPEVLGNFDR ETAVKREVNS  420
IGATVQEARG SAPYVSHDHA MGNLDFFEHS YPGQNIYPAG YSAIQVPNFP SVEQSGGYSN  480
VVSSDSGSGT GIKLRPRQMQ NQSDDRQFRT QGTANRRIRL QVKLQVGSVE PRSHTDSSQG  540
PESHQAVTEA EKASDEHSSS TSDETRDTTC GENGVSGEAD DLSTPVKDAY DSPVQDTVDV  600
SLKTTTKPSS SSRLYMSMVL VVVSLLVVFV GVWECFGVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-442718416170NO APICAL MERISTEM PROTEIN
1ut4_B2e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_A2e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_B2e-442718416170NO APICAL MERISTEM PROTEIN
3swm_A2e-442718419173NAC domain-containing protein 19
3swm_B2e-442718419173NAC domain-containing protein 19
3swm_C2e-442718419173NAC domain-containing protein 19
3swm_D2e-442718419173NAC domain-containing protein 19
3swp_A2e-442718419173NAC domain-containing protein 19
3swp_B2e-442718419173NAC domain-containing protein 19
3swp_C2e-442718419173NAC domain-containing protein 19
3swp_D2e-442718419173NAC domain-containing protein 19
4dul_A2e-442718416170NAC domain-containing protein 19
4dul_B2e-442718416170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375240.0KF437524.1 Nicotiana benthamiana putative membrane bound NAC transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759914.10.0PREDICTED: uncharacterized protein LOC104212382
TrEMBLA0A1U7VC750.0A0A1U7VC75_NICSY; uncharacterized protein LOC104212382
STRINGXP_009759914.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-87NAC domain containing protein 62