PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009759911.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 356aa MW: 40006.2 Da PI: 7.5726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009759911.1 148 YECKTCNRTFPSFQALGGHRASH 170 99**********99999998887 PP
2	zf-C2H2	14.2	0.00013	234	256	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_009759911.1 234 HTCSYCGAEFNSGQALGGHMRRH 256 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.3E-13	147	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.58E-8	147	170	No hit	No description
PROSITE profile	PS50157	11.843	148	175	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	148	170	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.58E-8	229	256	No hit	No description
PROSITE profile	PS50157	10.221	234	261	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0084	234	256	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.5E-12	234	258	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	236	256	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPIPFTIAVH SSTDDDGGDD IINNNNNNNI 60 SQPSATSTEN FPNDDVPTEE EEETAKCLIL LSQGGHPSSR QRFIESPPSK LFDLFNDDMG 120 LYPSKFNSKR YVETTNIGNG AKAGTYVYEC KTCNRTFPSF QALGGHRASH KKPKPLTIEP 180 RKTFFYFSDQ DEPSPTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG 240 AEFNSGQALG GHMRRHRGGA NTSLCLSPLN TKAFSFEDSP NNLKKPRNIG LSLDLNLPAP 300 EDQNHQSRNF QYPPNYPIAI EQQQDQKQTQ KQQQQQQQEQ TALVLSTTRQ LIDCHY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPIPFTIAVH SSTDDDGGDD IINNNNNNNI  60
SQPSATSTEN FPNDDVPTEE EEETAKCLIL LSQGGHPSSR QRFIESPPSK LFDLFNDDMG  120
LYPSKFNSKR YVETTNIGNG AKAGTYVYEC KTCNRTFPSF QALGGHRASH KKPKPLTIEP  180
RKTFFYFSDQ DEPSPTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG  240
AEFNSGQALG GHMRRHRGGA NTSLCLSPLN TKAFSFEDSP NNLKKPRNIG LSLDLNLPAP  300
EDQNHQSRNF QYPPNYPIAI EQQQDQKQTQ KQQQQQQQEQ TALVLSTTRQ LIDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759911.1	0.0	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_016464322.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S3ZJ48	0.0	A0A1S3ZJ48_TOBAC; zinc finger protein ZAT5-like
TrEMBL	A0A1U7V4L6	0.0	A0A1U7V4L6_NICSY; zinc finger protein ZAT5-like
STRING	XP_009759911.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-51	C2H2 family protein