PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009759909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 278aa MW: 30709.2 Da PI: 6.5055 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.7e-16 | 190 | 225 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp++Rrgp g++tLCnaCGl ++ kg XP_009759909.1 190 CIHCGTSSkdTPMMRRGPAGPRTLCNACGLTWANKG 225 99*******************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.212 | 64 | 99 | IPR010399 | Tify domain |
SMART | SM00979 | 1.1E-6 | 64 | 99 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.0E-9 | 68 | 98 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.302 | 131 | 173 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.1E-13 | 131 | 173 | IPR010402 | CCT domain |
SMART | SM00401 | 5.3E-9 | 184 | 237 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-12 | 186 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-14 | 189 | 230 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.8E-14 | 190 | 225 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.853 | 190 | 242 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 190 | 217 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.21E-14 | 190 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MNSDIQALNV DDHFSAAGEE VPAGTDKAVD FPIGYEGGVG GVKVTMPHHY TVYSASDHVA 60 FQNGEANLNQ LTLSFRGQVF VFDGVTTHKV QSVFQLLGGF EYSPGMQTVG LASPNQEDSV 120 DYPLHCADPK RLESLIRFRE KRKRRCYGKK IRYDVRQEVA FRMQRKNGQF ARKGSGEPKQ 180 DDNPPEETWC IHCGTSSKDT PMMRRGPAGP RTLCNACGLT WANKGIMRNL YTASNDNTLL 240 TELEDEDHSN SDYGAPPRYL SCQVSSSASD SSVLAAQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU041360 | 2e-40 | CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 2e-40 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 2e-40 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759908.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_009759909.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_009759910.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_016508030.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 1e-56 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A1S4D3L6 | 0.0 | A0A1S4D3L6_TOBAC; GATA transcription factor 25-like | ||||
TrEMBL | A0A1U7VDJ8 | 0.0 | A0A1U7VDJ8_NICSY; GATA transcription factor 25-like | ||||
STRING | XP_009759908.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 8e-59 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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