PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759908.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 278aa    MW: 30709.2 Da    PI: 6.5055
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16190225134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +Cgt++  Tp++Rrgp g++tLCnaCGl ++ kg
  XP_009759908.1 190 CIHCGTSSkdTPMMRRGPAGPRTLCNACGLTWANKG 225
                     99*******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.2126499IPR010399Tify domain
SMARTSM009791.1E-66499IPR010399Tify domain
PfamPF062004.0E-96898IPR010399Tify domain
PROSITE profilePS5101712.302131173IPR010402CCT domain
PfamPF062033.1E-13131173IPR010402CCT domain
SMARTSM004015.3E-9184237IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-12186236No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14189230IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.8E-14190225IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.853190242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190217IPR000679Zinc finger, GATA-type
CDDcd002024.21E-14190230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNSDIQALNV DDHFSAAGEE VPAGTDKAVD FPIGYEGGVG GVKVTMPHHY TVYSASDHVA  60
FQNGEANLNQ LTLSFRGQVF VFDGVTTHKV QSVFQLLGGF EYSPGMQTVG LASPNQEDSV  120
DYPLHCADPK RLESLIRFRE KRKRRCYGKK IRYDVRQEVA FRMQRKNGQF ARKGSGEPKQ  180
DDNPPEETWC IHCGTSSKDT PMMRRGPAGP RTLCNACGLT WANKGIMRNL YTASNDNTLL  240
TELEDEDHSN SDYGAPPRYL SCQVSSSASD SSVLAAQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0413602e-40CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBankHG9754432e-40HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755162e-40HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759908.10.0PREDICTED: GATA transcription factor 25-like
RefseqXP_009759909.10.0PREDICTED: GATA transcription factor 25-like
RefseqXP_009759910.10.0PREDICTED: GATA transcription factor 25-like
RefseqXP_016508030.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-56GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S4D3L60.0A0A1S4D3L6_TOBAC; GATA transcription factor 25-like
TrEMBLA0A1U7VDJ80.0A0A1U7VDJ8_NICSY; GATA transcription factor 25-like
STRINGXP_009759908.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-59GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]