PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759890.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 719aa    MW: 80228.6 Da    PI: 6.1998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06125145425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C ff++ G+C  GdrC+F H
  XP_009759890.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145
                     79******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1223160IPR000571Zinc finger, CCCH-type
PfamPF156635.6E-113286No hitNo description
SMARTSM003560.00233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4556288IPR000571Zinc finger, CCCH-type
SMARTSM003560.736487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573121148IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5124146IPR000571Zinc finger, CCCH-type
PfamPF146080.09126145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MVGPTPPQQL QIQTPSTAAA PATLSAEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV  60
ARLNPRDCWY WLNGSCLNPK CGFRHPPLDG FLGAQVQTPT GSSVPPVASV APTPNVPYGS  120
GKQGVPCIFF QQGFCLKGDR CPFFHAPISV PNKAPPHPVS TASTEKNPFK KAFGRLEKCV  180
QGKTFSQANT WKSGELPLQA QPIGKLGTHL SKNDSAFNEN VLPPNSVIDV VHHRHKPKGV  240
PPTNGNPVGR SNRVQQSVRF DDHSSIQNKG DDISRELSPG FDVLVDDELR GNDFYHGEDQ  300
YGRDAGRNEY DIGRSADYTS VADNDQDAYH DVYERDSHDR LAGRSGRVQH RASSEIIQGE  360
SAHLERRRYG RAYSPEEVRE SDLRHRLSKH KRVNGLRSVI SHDYASEKHV DDRGYQGSRR  420
DRQHLPSHDS SVASRLRGRI KLPSRSSSPT NGADMGLDRE TDRARNRGRL SLERPQLFSQ  480
QGRLRDRIKG RVQEDLSNAG RNNSGPRLRK DISENNSDFS GPRRLAELKG RKTAETSEQN  540
VDEQQALGKR KFQKHDSYQQ SGGDLSFEGP MPLQEILKRK RRSETGMPSD KSEDYQHERK  600
DHSLVTSSIS RSRSDLGQKE ESDPPSGEKN GPQETISAGH QSPLHDGANE LEAEEGMIVE  660
EEDDQDPEGH DQRDYDYEQV DGEDYNLDEG ENADAGEEYL DEDDDDGDDF AKKMGVVFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759890.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U7VDI30.0A0A1U7VDI3_NICSY; zinc finger CCCH domain-containing protein 17-like
STRINGXP_009759890.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633