PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759888.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 456aa    MW: 50082 Da    PI: 8.9082
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.7e-11168209546
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  XP_009759888.1 168 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 209
                     7789************************99888888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.0E-8164227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358166210IPR004827Basic-leucine zipper domain
PfamPF001709.1E-8168209IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-6168211No hitNo description
CDDcd147081.22E-21168219No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-8169213No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
PfamPF141443.5E-33250325IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MASKIGTAGN RSGTTGMPSF ISQIPVSNPM GTEANNTNTS RMSDFGVLEQ YLGFRIGDGA  60
NVNRSPLFNS TSATNPAVGF EVSGTINRTL APSNTSLPTA TPRSQTMLLQ SNLVSASGTH  120
HENWGESNMA DSGSRTDTST DMDGDDKNQL IEAGQSSDKS KEKVLDQKTL RRLAQNREAA  180
RKSRLRKKAY VQQLENSRLK LSQLEQDLQR ARQQGKYISN IADQSNGVGA NGPLAFDAEY  240
SRWLEEHNKH INELRTAVNA HASDPELRSI VNNVTAHFDE VFRVKGNAAK ADVFHVLSGM  300
WKTPAERCFM WIGGFRPSEL LKLLVNQLEP LTEQQLAGIY NLQQSSHQAE DALSQGMEAL  360
QQSLAETLAN GSPAPEGSSG DVANYMGQMA MAMGKLGTLE GFLRQADNLR QQTLQQMHRV  420
LTTRQSARAL LAINEYFSRL RALSSLWLAR PREQLV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankNTU902140.0U90214.1 Nicotiana tabacum leucine zipper transcription factor TGA2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312268.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1
RefseqXP_009759888.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3Z3860.0A0A1S3Z386_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1U7V0F80.0A0A1U7V0F8_NICSY; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGXP_009759888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-156TGACG motif-binding factor 6