PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759799.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 259aa    MW: 28845.8 Da    PI: 9.1486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-1960109255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a++k++g
  XP_009759799.1  60 HYRGVRQRP-WGKYAAEIRDPK----KaARVWLGTFETAEAAAIAYDEAALKFKG 109
                     7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3259118IPR001471AP2/ERF domain
SMARTSM003804.6E-3760123IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2160118IPR016177DNA-binding domain
PROSITE profilePS5103223.86860117IPR001471AP2/ERF domain
CDDcd000181.13E-1960118No hitNo description
PfamPF008474.6E-1260109IPR001471AP2/ERF domain
PRINTSPR003679.6E-116172IPR001471AP2/ERF domain
PRINTSPR003679.6E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYSAARSQQD MSTMVSVLSQ VIGNTSSTIT TAAGNTLNHL SVQNQPQPNQ QQGNIERRRH  60
YRGVRQRPWG KYAAEIRDPK KAARVWLGTF ETAEAAAIAY DEAALKFKGN KAKLNFPERV  120
LAKTEFGYLT TAATTTQEQL INISAANFLP NYNFKPFSQL QHYPQLLLTG NNNADSSRFN  180
HTSGFGPDTL NTAEPANSWL NPPLSSTSIS ESSSMTSLVQ QAPSNYQQVD ENISSQFWNS  240
SSSRPSESSN NWEEFYYPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2759120163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759799.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH544e-49EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U7VBV00.0A0A1U7VBV0_NICSY; ethylene-responsive transcription factor ERF113-like
STRINGXP_009759799.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]