PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009759753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 37179.8 Da PI: 8.9535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.4 | 3.3e-54 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk ++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ XP_009759753.1 23 LPPGFRFHPTDEELVVHYLKKKSASAPLPV-DIIAEVDLYKFDPWELPAKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVFTA 116 79****************************.99***************99999*****************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ XP_009759753.1 117 gGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 150 77788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-65 | 18 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.267 | 23 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-28 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MESTTDSSTG TPPPRLQPPQ PQLPPGFRFH PTDEELVVHY LKKKSASAPL PVDIIAEVDL 60 YKFDPWELPA KANFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVFTAGGNQ 120 KVGVKKALVF YGGKPPKGVK TNWIMHEYRI AENKTNNKPP GCDIANKKGS LRLDDWVLCR 180 IYKKNNTQRP IDHHERDDMN EMMGRSIPTC IANSISPFEQ NMYEGIINNN TSDMINVNNV 240 GSISSSVLPP KRPLPAGLYW NEDHNTNSPS AKRFLAENSL DNGLNMNITR PDEHNSFLSQ 300 LPQNQVLGSL SDGVIFRQPY NQVTGMNWYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-75 | 20 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-75 | 20 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-75 | 20 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-75 | 20 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-74 | 20 | 187 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-75 | 20 | 187 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-75 | 20 | 187 | 14 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759753.1 | 0.0 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q9LD44 | 1e-112 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A1U7V021 | 0.0 | A0A1U7V021_NICSY; NAC transcription factor 25-like | ||||
STRING | XP_009759753.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-108 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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