PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759700.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 227aa    MW: 25285.3 Da    PI: 7.7465
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.91.2e-26113189158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk....................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQy++Il+RRq+Rak+e+ekk                      +  + pylheSRh hAl+R+Rg+gGrF
  XP_009759700.1 113 DEPVFVNAKQYHGILRRRQSRAKAESEKKllkarklkdeyqlcwtisarP-NIIQLPYLHESRHLHALKRARGCGGRF 189
                     79******************************************998752.55789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-27111192IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.364112192IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-25114189IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTSSLHYHSD GSENEQPEKQ SEAHSESSSP AIGMSVPGTV TPNMHYVMPA QLGNENAMAQ  60
TAYPYPDPYY RSIFAPYDAQ PYPTQPYPAQ PMVHVQLMGI QQAGVPLPSD AIDEPVFVNA  120
KQYHGILRRR QSRAKAESEK KLLKARKLKD EYQLCWTISA RPNIIQLPYL HESRHLHALK  180
RARGCGGRFT AKKTDNQPKQ DESGDNSQVN INLDPGKNEV ASAENAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-16112204173NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127148RRRQSRAKAESEKKLLKARKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133701e-177BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759700.11e-170PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_016487789.11e-170PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A1S4BFX41e-169A0A1S4BFX4_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A1U7VCZ71e-169A0A1U7VCZ7_NICSY; nuclear transcription factor Y subunit A-7-like isoform X2
STRINGXP_009759697.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-47nuclear factor Y, subunit A7