PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009759699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 229aa MW: 25526.6 Da PI: 7.7465 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 84.9 | 1.2e-26 | 115 | 191 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk....................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekk + + pylheSRh hAl+R+Rg+gGrF XP_009759699.1 115 DEPVFVNAKQYHGILRRRQSRAKAESEKKllkarklkdeyqlcwtisarP-NIIQLPYLHESRHLHALKRARGCGGRF 191 79******************************************998752.55789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.2E-27 | 113 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 30.364 | 114 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-25 | 116 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 119 | 139 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MTSSLHYHSD GSENEQPEKQ SEAHSESSSP AIGMSVPGTV TPNMHYVMPA QLGNENAMLQ 60 AQTAYPYPDP YYRSIFAPYD AQPYPTQPYP AQPMVHVQLM GIQQAGVPLP SDAIDEPVFV 120 NAKQYHGILR RRQSRAKAES EKKLLKARKL KDEYQLCWTI SARPNIIQLP YLHESRHLHA 180 LKRARGCGGR FTAKKTDNQP KQDESGDNSQ VNINLDPGKN EVASAENAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-16 | 114 | 206 | 1 | 73 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 150 | RRRQSRAKAESEKKLLKARKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013370 | 0.0 | BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759697.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_009759698.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_009759699.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_016487785.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_016487786.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_016487787.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Refseq | XP_016487788.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
TrEMBL | A0A1S4BG10 | 1e-170 | A0A1S4BG10_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
TrEMBL | A0A1U7VBM4 | 1e-170 | A0A1U7VBM4_NICSY; nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
STRING | XP_009759697.1 | 1e-171 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 9e-46 | nuclear factor Y, subunit A7 |