PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009759475.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 34322.9 Da PI: 6.8512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp+ + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + XP_009759475.1 8 LPPGFRFHPTDEELVTHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPHLALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGH- 100 79**************************99.88***************7656689*************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfy g+apkgekt+W+mheyrl XP_009759475.1 101 -PKPMGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-63 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.413 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTAAELQLPP GFRFHPTDEE LVTHYLCRKC ASQPIAVPII AEIDLYKYDP WDLPHLALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGH PKPMGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KNNNSLRLDD WVLCRIYNKK GSIEKNQLSN RKMNTSYMDM 180 VESPEDRKPE ILLPPPQQQQ QVHNDFFYLD PSDSVPKIHS DSSCSEHVLS PEFTCEREVQ 240 SEPKLTDWEK ATLDLPFNYM DATTGATTVD NSLLGSQFQS SYQMSPLQDM FMHLHKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-83 | 4 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB610801 | 0.0 | AB610801.1 Nicotiana benthamiana mRNA for Nam-like protein, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759475.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-144 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1U7VCC6 | 0.0 | A0A1U7VCC6_NICSY; NAC domain-containing protein 2-like | ||||
STRING | XP_009759475.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-142 | NAC family protein |