PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009759087.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 356aa MW: 42134.2 Da PI: 6.4445

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.7	8.3e-48	60	185	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppG+rF P+deel+ +yLkk+v +++l+ + ikev++yk+ P++L + ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++++ XP_009759087.1 60 PPGYRFCPHDEELIIHYLKKRVMNERLPH-DKIKEVNLYKYSPQELSeNYSMLGDKEWYFFTPRDRKYPNGNRPNRAAGTGYWKATGADKPIKH- 152 9************************99.88**********844444599***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg +k Lvfy+g+ pkg kt+W+mhe+r+ XP_009759087.1 153 NDIKVGFRKALVFYEGKPPKGDKTNWIMHEFRV 185 999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-57	51	211	IPR003441	NAC domain
PROSITE profile	PS51005	55.228	59	211	IPR003441	NAC domain
Pfam	PF02365	4.7E-25	60	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEFDEQTKAH LKASQNPKIL ELEKQKQVED EKGLIIVKPN YNIISEISRV NYVDDSFVFP 60 PGYRFCPHDE ELIIHYLKKR VMNERLPHDK IKEVNLYKYS PQELSENYSM LGDKEWYFFT 120 PRDRKYPNGN RPNRAAGTGY WKATGADKPI KHNDIKVGFR KALVFYEGKP PKGDKTNWIM 180 HEFRVNESRR LKRHAQDMRL DDWVLCRIYK KVDKSFKNAR KEQEQDDASI SCSSIGKMEN 240 CDYEGTTDSY EIARQNLKLP HHYDITFDDP GFNMDYNKYS LDNFSHYGPR PNYGMPLHPS 300 FSPGNIFWDQ RGYQENCNIL PMNFDVNNFY EDSYDEIQSQ NILDSLLDEN SSIYKD

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEFDEQTKAH LKASQNPKIL ELEKQKQVED EKGLIIVKPN YNIISEISRV NYVDDSFVFP  60
PGYRFCPHDE ELIIHYLKKR VMNERLPHDK IKEVNLYKYS PQELSENYSM LGDKEWYFFT  120
PRDRKYPNGN RPNRAAGTGY WKATGADKPI KHNDIKVGFR KALVFYEGKP PKGDKTNWIM  180
HEFRVNESRR LKRHAQDMRL DDWVLCRIYK KVDKSFKNAR KEQEQDDASI SCSSIGKMEN  240
CDYEGTTDSY EIARQNLKLP HHYDITFDDP GFNMDYNKYS LDNFSHYGPR PNYGMPLHPS  300
FSPGNIFWDQ RGYQENCNIL PMNFDVNNFY EDSYDEIQSQ NILDSLLDEN SSIYKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-58	59	211	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321). {ECO:0000269\|PubMed:17124321}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759087.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_016456837.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	A0SPJ4	4e-62	NAMB1_TRIDC; NAC transcription factor NAM-B1
TrEMBL	A0A1S3YYB7	0.0	A0A1S3YYB7_TOBAC; NAC transcription factor 29-like
TrEMBL	A0A1U7USN8	0.0	A0A1U7USN8_NICSY; NAC transcription factor 29-like
STRING	XP_009759087.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	2e-64	NAC domain containing protein 32

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]