PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009758605.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 774aa MW: 88796.3 Da PI: 6.6149

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009758605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.2	1.1e-31	67	158	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++eHnHel+p XP_009758605.1 67 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSSFVKEHNHELVP 158 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-30	67	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-31	279	371	IPR018289	MULE transposase domain
Pfam	PF04434	1.0E-12	547	593	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.288	559	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.5E-10	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MENEVIEFDI GLGGGGGSED GDGDDVLDEE NVASCFAAVR SYSPQGDLDL EPYEGMEFES 60 EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE KRTKDREIKR 120 PRTITRVGCK AALSVKIQDS GKWVVSSFVK EHNHELVPPD QVHCLRSHRQ ISGPAKTLID 180 TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ LLLDYLKQMH 240 SQNPGFFYAV QGDEDQCTGN VFWADSKARA NYSYFGDTVT FDTTYRSNRY RLPFAPFTGV 300 NHHGQPVLFG CAFLINESEA SFIWLFKTWF AAMTGQPPLS MTTDHDAVIR SALMQVFPET 360 RHRFCKWHIF KKCQEKLSHV FLEHPNFEAD FHKCVNLSES TEEFESCWLS LVDKYELRDH 420 DWLQAIYLDR RQWVPVYLHD AFFAEMSITQ RSDSMNSYFD GYVNASTNLN QFFKLYEKAV 480 ESRAEKEVKA DYDTMNTFPV LKTPSPMEKQ ASEVYTRKLF MRFQEELVGT LTFMANKVED 540 DGLVTTYQVA KFGDDNRAYY VRFNVLEMKA TCSCQMFQFS GLLCRHILAV FRVTNVLTLP 600 SHYILKRWSR SAKSSVALED RVSDVINYYL ESHTVRYNIL RHEAFKFVEE GAESVDSYAV 660 AMAALEVALN KVARAAKHDG RISLVNGHCR EYLTRNGVHA NYNIEDEQRS LACPLSEDDM 720 DAKIQELSYQ LDCANRKCEI YRANLYSVLK DIEDHKQQLS IKVQNIKLSL KDGL

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MENEVIEFDI GLGGGGGSED GDGDDVLDEE NVASCFAAVR SYSPQGDLDL EPYEGMEFES  60
EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE KRTKDREIKR  120
PRTITRVGCK AALSVKIQDS GKWVVSSFVK EHNHELVPPD QVHCLRSHRQ ISGPAKTLID  180
TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ LLLDYLKQMH  240
SQNPGFFYAV QGDEDQCTGN VFWADSKARA NYSYFGDTVT FDTTYRSNRY RLPFAPFTGV  300
NHHGQPVLFG CAFLINESEA SFIWLFKTWF AAMTGQPPLS MTTDHDAVIR SALMQVFPET  360
RHRFCKWHIF KKCQEKLSHV FLEHPNFEAD FHKCVNLSES TEEFESCWLS LVDKYELRDH  420
DWLQAIYLDR RQWVPVYLHD AFFAEMSITQ RSDSMNSYFD GYVNASTNLN QFFKLYEKAV  480
ESRAEKEVKA DYDTMNTFPV LKTPSPMEKQ ASEVYTRKLF MRFQEELVGT LTFMANKVED  540
DGLVTTYQVA KFGDDNRAYY VRFNVLEMKA TCSCQMFQFS GLLCRHILAV FRVTNVLTLP  600
SHYILKRWSR SAKSSVALED RVSDVINYYL ESHTVRYNIL RHEAFKFVEE GAESVDSYAV  660
AMAALEVALN KVARAAKHDG RISLVNGHCR EYLTRNGVHA NYNIEDEQRS LACPLSEDDM  720
DAKIQELSYQ LDCANRKCEI YRANLYSVLK DIEDHKQQLS IKVQNIKLSL KDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758605.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_016461330.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZA49	0.0	A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7V9U1	0.0	A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRING	XP_009758605.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]