PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009758570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 170aa MW: 17694.6 Da PI: 8.394 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.1 | 1.3e-12 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_009758570.1 7 CSGCRTILLYPRGASNVCCAVCNA 30 **********************97 PP | |||||||
2 | zf-LSD1 | 45.7 | 1e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV XP_009758570.1 46 CGGCRTLLMHPRGASSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 40.2 | 5.5e-13 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ XP_009758570.1 84 CGNCRMMLMYPCGAPSVKCAICHY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.8E-12 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.1E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-17 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.8E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAS 60 SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAICHYITN VNAGDGRVHV 120 PSGTATPASG SSSSTAKARS QNQTVVVQNP MSVDESGKLV SNVVVGVTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT036491 | 0.0 | KT036491.1 Solanum tuberosum cultivar Kexin-4 LSD1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758570.1 | 1e-120 | PREDICTED: protein LSD1-like | ||||
Refseq | XP_009758571.1 | 1e-120 | PREDICTED: protein LSD1-like | ||||
Refseq | XP_016470175.1 | 1e-120 | PREDICTED: protein LSD1-like | ||||
Refseq | XP_016470177.1 | 1e-120 | PREDICTED: protein LSD1-like | ||||
Swissprot | Q6ASS2 | 3e-65 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A1S4A0Q5 | 1e-118 | A0A1S4A0Q5_TOBAC; protein LSD1-like | ||||
TrEMBL | A0A1U7V9Q4 | 1e-118 | A0A1U7V9Q4_NICSY; protein LSD1-like | ||||
STRING | XP_009758570.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-57 | LSD family protein |
Publications ? help Back to Top | |||
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