PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758491.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 303aa    MW: 34166.8 Da    PI: 5.7608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3077135259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  XP_009758491.1  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3173137IPR003657WRKY domain
SuperFamilySSF1182902.35E-2675137IPR003657WRKY domain
SMARTSM007744.2E-3676136IPR003657WRKY domain
PROSITE profilePS5081132.40977137IPR003657WRKY domain
PfamPF031063.8E-2678135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDGRFNNIFL SHEQEDSENS PENSLDSPRS DMFNDNKMMT STSSPKRRRS IQKRVVSVPI  60
KEVEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD  120
PNMLVVTYSC EHNHPWPASR NNQHNQRTTT TTSCTNNAKT KTKTLASLAA ATTIITTTNI  180
VVSDIEREKD TSNFASQSEP NSDEKFTNLG ESSLISCNEF GWFSDFECSS TTMLESPILT  240
EVDVTDIDMS STLTTLREED DSLFADLGEL PEYSRVFGRG MMERDEERRR HSLSLTPWCG  300
TTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2266137379Disease resistance protein RRS1
5w3x_D3e-2266137379Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758491.10.0PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBLA0A1U7V0I80.0A0A1U7V0I8_NICSY; probable WRKY transcription factor 65 isoform X2
STRINGXP_009758490.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-72WRKY DNA-binding protein 65