PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 912aa    MW: 99492.5 Da    PI: 4.8703
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.57.2e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  XP_009758415.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                    666666677776664325567777777788877777787777799*************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-8475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
PROSITE profilePS500718.9241377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-61379IPR009057Homeodomain-like
CDDcd000860.008751375No hitNo description
PfamPF167192.5E-40161288IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDSAMVRT PAKLSASPVP QSDPAAVRIM  120
PQASQPISSP QVKSMPQAPQ PLPAPSVAAQ NVGRSASDNI QMEFEAKSAR DGAWYDVASF  180
LSHRSVETAD PEVLVRFAGF GAEEDEWVNV CKHVRQRSLP CESSECVAVL PGDLILCFQE  240
GKEQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL  300
NAESLKQQKI GNDITRGNTT KVYPPSETTQ KAQTESRIKP AEPTQKQPAP EDTTNAVPNV  360
APMQLQKSST DSLIGNTLAE TTPQRMEEMK EKPVAGTTEV PREEKREMPL AERMNEAPAE  420
TAEKSPAETT LKPPAASTSK SDEAPEEPPT ETTLKPAAAS TTKPDEAPEQ PPAETTLKPL  480
APSTSKPDEA PEKSPVETPL KPPAASTSKP DEEACPTDAK PPVFSLVLIC YDMLVSTVVL  540
WLKSATEERS PLVSLHAKWF LNSQGAIFRH GGINYRQLLQ LKEIVPLRKV CRRPETDYRL  600
QQLNAESLKQ QKIGNDITRG NTTKVYPPSE TTQKAQTESR IKPAEPTQKQ PAPEDTTNAV  660
PNVAPMQLQK SSTDSLIGNT LAETTPQRME EMKEKPVAGT TEVPREEKRE MPLAERMNEA  720
PAETAEKSPA ETTLKPPAAS TSKSDEAPEE PPTETTLKPA AASTTKPDEA PEQPPAETTL  780
KPLAPSTSKP DEAPEKSPVE TPLKPPAAST SKPDEEPEKS PAETPLKPPA ASTSKPDEEP  840
EQPPAETTLK PPAASMSKPD EEPEQPPAET TLKPQADSTS KLAEAPEEQP KEEEHVDAGA  900
TTTSMDHDDA SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461622924134SHH1 SAWADEE
4iur_B2e-461622924134SHH1 SAWADEE
4iut_A2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461622924134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758415.10.0PREDICTED: proteoglycan 4-like
TrEMBLA0A1U7V9C70.0A0A1U7V9C7_NICSY; proteoglycan 4-like
STRINGXP_009758415.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-125sequence-specific DNA binding transcription factors;sequence-specific DNA binding