PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009758415.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 912aa MW: 99492.5 Da PI: 4.8703

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009758415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	7.2e-06	14	74	7	55
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f+++++ e+e+ + p +e LA+k ++ +qV +WFqNrR+ XP_009758415.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74 666666677776664325567777777788877777787777799*************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-8	4	75	IPR009057	Homeodomain-like
SMART	SM00389	0.006	7	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	8.924	13	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-6	13	79	IPR009057	Homeodomain-like
CDD	cd00086	0.00875	13	75	No hit	No description
Pfam	PF16719	2.5E-40	161	288	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM 60 KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDSAMVRT PAKLSASPVP QSDPAAVRIM 120 PQASQPISSP QVKSMPQAPQ PLPAPSVAAQ NVGRSASDNI QMEFEAKSAR DGAWYDVASF 180 LSHRSVETAD PEVLVRFAGF GAEEDEWVNV CKHVRQRSLP CESSECVAVL PGDLILCFQE 240 GKEQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL 300 NAESLKQQKI GNDITRGNTT KVYPPSETTQ KAQTESRIKP AEPTQKQPAP EDTTNAVPNV 360 APMQLQKSST DSLIGNTLAE TTPQRMEEMK EKPVAGTTEV PREEKREMPL AERMNEAPAE 420 TAEKSPAETT LKPPAASTSK SDEAPEEPPT ETTLKPAAAS TTKPDEAPEQ PPAETTLKPL 480 APSTSKPDEA PEKSPVETPL KPPAASTSKP DEEACPTDAK PPVFSLVLIC YDMLVSTVVL 540 WLKSATEERS PLVSLHAKWF LNSQGAIFRH GGINYRQLLQ LKEIVPLRKV CRRPETDYRL 600 QQLNAESLKQ QKIGNDITRG NTTKVYPPSE TTQKAQTESR IKPAEPTQKQ PAPEDTTNAV 660 PNVAPMQLQK SSTDSLIGNT LAETTPQRME EMKEKPVAGT TEVPREEKRE MPLAERMNEA 720 PAETAEKSPA ETTLKPPAAS TSKSDEAPEE PPTETTLKPA AASTTKPDEA PEQPPAETTL 780 KPLAPSTSKP DEAPEKSPVE TPLKPPAAST SKPDEEPEKS PAETPLKPPA ASTSKPDEEP 840 EQPPAETTLK PPAASMSKPD EEPEQPPAET TLKPQADSTS KLAEAPEEQP KEEEHVDAGA 900 TTTSMDHDDA SV

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDSAMVRT PAKLSASPVP QSDPAAVRIM  120
PQASQPISSP QVKSMPQAPQ PLPAPSVAAQ NVGRSASDNI QMEFEAKSAR DGAWYDVASF  180
LSHRSVETAD PEVLVRFAGF GAEEDEWVNV CKHVRQRSLP CESSECVAVL PGDLILCFQE  240
GKEQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL  300
NAESLKQQKI GNDITRGNTT KVYPPSETTQ KAQTESRIKP AEPTQKQPAP EDTTNAVPNV  360
APMQLQKSST DSLIGNTLAE TTPQRMEEMK EKPVAGTTEV PREEKREMPL AERMNEAPAE  420
TAEKSPAETT LKPPAASTSK SDEAPEEPPT ETTLKPAAAS TTKPDEAPEQ PPAETTLKPL  480
APSTSKPDEA PEKSPVETPL KPPAASTSKP DEEACPTDAK PPVFSLVLIC YDMLVSTVVL  540
WLKSATEERS PLVSLHAKWF LNSQGAIFRH GGINYRQLLQ LKEIVPLRKV CRRPETDYRL  600
QQLNAESLKQ QKIGNDITRG NTTKVYPPSE TTQKAQTESR IKPAEPTQKQ PAPEDTTNAV  660
PNVAPMQLQK SSTDSLIGNT LAETTPQRME EMKEKPVAGT TEVPREEKRE MPLAERMNEA  720
PAETAEKSPA ETTLKPPAAS TSKSDEAPEE PPTETTLKPA AASTTKPDEA PEQPPAETTL  780
KPLAPSTSKP DEAPEKSPVE TPLKPPAAST SKPDEEPEKS PAETPLKPPA ASTSKPDEEP  840
EQPPAETTLK PPAASMSKPD EEPEQPPAET TLKPQADSTS KLAEAPEEQP KEEEHVDAGA  900
TTTSMDHDDA SV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	2e-46	162	292	4	134	SHH1 SAWADEE
4iur_B	2e-46	162	292	4	134	SHH1 SAWADEE
4iut_A	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	2e-46	162	292	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758415.1	0.0	PREDICTED: proteoglycan 4-like
TrEMBL	A0A1U7V9C7	0.0	A0A1U7V9C7_NICSY; proteoglycan 4-like
STRING	XP_009758415.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8803	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-125	sequence-specific DNA binding transcription factors;sequence-specific DNA binding