PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009758127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 117aa MW: 13020.4 Da PI: 10.4876 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.7 | 2.8e-17 | 19 | 53 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+tt TplWR+gp g+k+LCnaCG++y kk++ XP_009758127.1 19 CCDCHTTRTPLWRSGPAGPKSLCNACGIKYNKKRR 53 889*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.8E-11 | 13 | 63 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.374 | 13 | 48 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.1E-15 | 14 | 68 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 6.65E-13 | 14 | 53 | No hit | No description |
CDD | cd00202 | 1.36E-12 | 18 | 71 | No hit | No description |
Pfam | PF00320 | 4.9E-15 | 19 | 53 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 19 | 44 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MRMDLTEVKG SQVEEMKTCC DCHTTRTPLW RSGPAGPKSL CNACGIKYNK KRRQLLGLDK 60 GRSDKGKKKR KISGEKNSRE KIGQSLKMKL MTLGGKLREE EQAAILLMAL SCGSVYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 70 | KRRQLLGLDKGRSDKGKKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758127.1 | 4e-80 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 1e-29 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1U7UPT2 | 1e-78 | A0A1U7UPT2_NICSY; GATA transcription factor 16-like | ||||
STRING | XP_009758127.1 | 2e-79 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 1e-23 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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