PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757888.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 322aa    MW: 36825.9 Da    PI: 6.8738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+ +++ +G g+W+ ++ + g+ R++k+c++rw +yl
   XP_009757888.1 14 RGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRSGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding46.96.6e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++++E++l++++++  G++ W+ Ia++++ gRt++++k+ w+++
   XP_009757888.1  67 RGRFSPDEEKLIINLHAAVGNR-WAHIASRLP-GRTDNEIKNSWNSW 111
                      89********************.*********.***********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.095965IPR017930Myb domain
SuperFamilySSF466891.11E-2811108IPR009057Homeodomain-like
SMARTSM007173.7E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001674.48E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129417.92366116IPR017930Myb domain
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002496.6E-1467111IPR001005SANT/Myb domain
CDDcd001673.25E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGQHTCCNQQ KVKRGLWSPE EDEKLITYIT THGYGCWSEV PDKAGLQRSG KSCRLRWINY  60
LRPDIRRGRF SPDEEKLIIN LHAAVGNRWA HIASRLPGRT DNEIKNSWNS WIKKKLKNPS  120
QLHSTNTTSS NKNPHHHHHQ QQQIQSRFTY NTTKQQHEIF NSQDFGAKPQ VQQESLCYSP  180
NSFVFGTTCS LETIAYGGHA TSRAISTSSL FQDTLSLTSE FWQTHEQQKH EAQTSGMNSN  240
YLPPLIESIE PPMEIPSVCR TNNILDVSGQ MGRNQLNEWE VETQQYCPSY LIWDQDTSPF  300
IGDDLLAPTT SDTEELLSSF PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757888.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_016451731.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1S3YHJ70.0A0A1S3YHJ7_TOBAC; transcription repressor MYB6-like
TrEMBLA0A1U7UUL10.0A0A1U7UUL1_NICSY; transcription repressor MYB6-like
STRINGXP_009757888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-77myb domain protein 103