PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009757835.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 290aa MW: 33232.5 Da PI: 5.3346

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009757835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	9.3e-15	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +L++a ++ +l+rg l++++W++v++ + + + +r+ +qCk++++ l+kryk +k+ + + + +s++p+f++l+ XP_009757835.1 24 CWTEEATWTLVDAWGRRYIELNRGFLRQTDWQQVADSVnalhgHTAKTRRTDVQCKNRIDTLKKRYKVEKAKLVESNGTLTSSWPFFERLD 114 8************************************999999999*******************999998888899***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51029	8.601	19	121	IPR006578	MADF domain
Pfam	PF13837	3.2E-23	22	115	No hit	No description
Gene3D	G3DSA:1.10.601.10	1.8E-4	184	277	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGEITASSTQ VTAPSRPLPF REDCWTEEAT WTLVDAWGRR YIELNRGFLR QTDWQQVADS 60 VNALHGHTAK TRRTDVQCKN RIDTLKKRYK VEKAKLVESN GTLTSSWPFF ERLDFLIGNS 120 SNKVTAVMVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPVV TPVVLPQKRQ MPVLDDSYFR 180 RNYSAVAAAA AAEEGEEDYD DDDDEEEEED MGMSEQKDGM RRLAKAIERF GEIYERVEEM 240 KQRQMVELEK QRMQFAKDLE VQRMQLFMDT QVQLQKIKHA KRSGSDDIYS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757835.1	0.0	PREDICTED: PH domain-containing protein DDB_G0287875-like
Refseq	XP_016486231.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1S4BBN4	0.0	A0A1S4BBN4_TOBAC; trihelix transcription factor ASIL2-like
TrEMBL	A0A1U7V7V3	0.0	A0A1U7V7V3_NICSY; PH domain-containing protein DDB_G0287875-like
STRING	XP_009757835.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	6e-39	sequence-specific DNA binding transcription factors