PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009757461.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 485aa MW: 54638.7 Da PI: 6.2711

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009757461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.8	3.9e-34	14	106	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d ++++++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ + weF+++ F +g+k+ll++ XP_009757461.1 14 FLCKTYDMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGFLRGHKHLLKT 99 9*************************************************************9987.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k + XP_009757461.1 100 ISRRKPS 106 **976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-36	8	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.43E-33	9	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.0E-59	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.9E-30	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MEAIHEIGNS PPPFLCKTYD MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN 60 NFSSFVRQLN TYGYRKVDPD CWEFANEGFL RGHKHLLKTI SRRKPSQMQV HQDTTSQVQS 120 VSTESCVEVG KFGIEEEVER LKRDKNVHME ELVKLKQQQQ ATDHCLENVG QRLHLMEQRQ 180 QQTMSFLAKA LQSPGFIAEL IHQQNEGNRR IPGMKKKRRF PNQEEEIYAG KPVSTMHDRQ 240 IVRYQPLMNE AAKALLQKIL KTNASGRLET KVKNTNGVLT NHGHAFENTL DSAGICSRIS 300 GVTLPQLPTS SQSHLTADSG FPFNSNLSAI PEIQYSPSLV PWEAKVPHFP GLNALNFQTD 360 HVLPEVSEGY GINTLDNFGI TDLKRLGTGD LPDIDRMQGI VDGVTSIVPD RYSTDTDIDI 420 FLDEMSKLPG INDIFWDQIL SASPLTGDKH EIGSLALGDG LAKEEDVPGI QESAFDKKKH 480 MSYLT

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MEAIHEIGNS PPPFLCKTYD MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN  60
NFSSFVRQLN TYGYRKVDPD CWEFANEGFL RGHKHLLKTI SRRKPSQMQV HQDTTSQVQS  120
VSTESCVEVG KFGIEEEVER LKRDKNVHME ELVKLKQQQQ ATDHCLENVG QRLHLMEQRQ  180
QQTMSFLAKA LQSPGFIAEL IHQQNEGNRR IPGMKKKRRF PNQEEEIYAG KPVSTMHDRQ  240
IVRYQPLMNE AAKALLQKIL KTNASGRLET KVKNTNGVLT NHGHAFENTL DSAGICSRIS  300
GVTLPQLPTS SQSHLTADSG FPFNSNLSAI PEIQYSPSLV PWEAKVPHFP GLNALNFQTD  360
HVLPEVSEGY GINTLDNFGI TDLKRLGTGD LPDIDRMQGI VDGVTSIVPD RYSTDTDIDI  420
FLDEMSKLPG INDIFWDQIL SASPLTGDKH EIGSLALGDG LAKEEDVPGI QESAFDKKKH  480
MSYLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	12	103	27	129	Heat shock factor protein 1
5d5v_B	2e-23	12	103	27	129	Heat shock factor protein 1
5d5v_D	2e-23	12	103	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	218	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757456.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Refseq	XP_009757457.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Refseq	XP_009757458.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Refseq	XP_009757460.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Refseq	XP_009757461.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-133	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1U7UMQ4	0.0	A0A1U7UMQ4_NICSY; heat stress transcription factor A-1-like
STRING	XP_009757456.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-119	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]