PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009757428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22392.2 Da PI: 4.5651 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121 | 6.6e-38 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+ XP_009757428.1 8 SCGACKFLRRRCSNECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFALEQQVASLVEEI 102 6***********************9978******************************************************************9 PP DUF260 95 allkee 100 + + ++ XP_009757428.1 103 EITANQ 108 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.489 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-35 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAGPAGSSCG ACKFLRRRCS NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH 60 CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEITANQMA FYAGEVPMEN 120 TINTLQFSLE CNNMNVGNNH VNHSITSLAH VNDTSANEAF ITQMNAELPE INGFDNLFSS 180 TFFDFDISDR VFDGLDLICT TNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 5 | 116 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 5 | 116 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757428.1 | 1e-150 | PREDICTED: LOB domain-containing protein 33-like | ||||
Refseq | XP_016488257.1 | 1e-150 | PREDICTED: LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 5e-53 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A1S4BHD4 | 1e-149 | A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like | ||||
TrEMBL | A0A1U7UT89 | 1e-149 | A0A1U7UT89_NICSY; LOB domain-containing protein 33-like | ||||
STRING | XP_009757428.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-55 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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