PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757386.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 376aa    MW: 42344.6 Da    PI: 8.1873
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1551110155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_009757386.1  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqnKKgRQVYLGAYDDEETAAHAYDLAALKYWG 110
                     57*******************999966656446*************************98 PP
2AP251.72.1e-16153204155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_009757386.1 153 SKYRGVARHHNNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204
                     89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1151110IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-1751119IPR016177DNA-binding domain
CDDcd000188.63E-2051120No hitNo description
SMARTSM003803.4E-2752124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1652118IPR001471AP2/ERF domain
PROSITE profilePS5103220.12652118IPR001471AP2/ERF domain
PRINTSPR003674.4E-65364IPR001471AP2/ERF domain
PfamPF008473.1E-12153204IPR001471AP2/ERF domain
CDDcd000181.22E-23153214No hitNo description
SuperFamilySSF541717.85E-18153214IPR016177DNA-binding domain
SMARTSM003803.6E-25154218IPR001471AP2/ERF domain
PROSITE profilePS5103218.36154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17154213IPR001471AP2/ERF domain
PRINTSPR003674.4E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAKTSKSNQK NGTTTTTSSS SSSNKGHGNA IGKAKRTRKS VPRDSPPQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNETQN KKGRQVYLGA YDDEETAAHA YDLAALKYWG QDTVLNFPVL  120
TYEKELKEME AQSKEGYIGS LRRKSNGFSR GVSKYRGVAR HHNNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYVKWL RPSNQTNSNI ITTNNPSDNT  240
EPNPNPNADD IHSMPNTKEK MEFSFLQQQQ QQQQQSSNSD STAVALPCPA ASATASSALG  300
LLLQSSKFKE MLERTSASDC PETPPEPDRP RRSFPDDIQT YFDCQESSSF IEEHNIIFGD  360
LDSFASPNMF QCELDS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757386.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016483746.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-121AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S4B4H30.0A0A1S4B4H3_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7UX980.0A0A1U7UX98_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009757386.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]