PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_025963-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38578.5 Da PI: 4.9487 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+ ++++G ++W++ ++ g+ R++k+c++rw +yl NNU_025963-RA 16 KGPWTPAEDMKLIAFIQRHGHENWRALPKQAGLLRCGKSCRLRWTNYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.6e-18 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e++++++++lG++ W++Ia++++ gRt++++k+ w+++l NNU_025963-RA 69 RGNFTVEEEEIIIKLHELLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.772 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.507 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.17E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRGRTPCCD KTGLKKGPWT PAEDMKLIAF IQRHGHENWR ALPKQAGLLR CGKSCRLRWT 60 NYLRPDIKRG NFTVEEEEII IKLHELLGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVP 120 KAPKILEELV EKQGPPVEVS PTEWKKDVLD ALLDDKIGIE IENRMVQEVD RSRDECQKLS 180 PSTSSSSCGS CVSDSNQIDA SGREGQAYPQ SESGGRLCET QSTLQEVNKN EQTEERLEIP 240 FEPNLDFWEV FDDYPCLLTS SVPMCGVESN QHSEGCKKEV ESMRWVSYLE NELGLHETTE 300 EVFQPQVSNS SCEEILLKTE VDPVATYFQM SPSSPLNFGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247284.1 | 0.0 | PREDICTED: transcription factor MYB3-like | ||||
TrEMBL | A0A1U7ZGL6 | 0.0 | A0A1U7ZGL6_NELNU; transcription factor MYB3-like | ||||
STRING | XP_010247284.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 6e-63 | myb domain protein 63 |