PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025766-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 281aa MW: 32194.3 Da PI: 5.6056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025766-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF P+deelv++yL kk++++ ++ ++ evd++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v+++ NNU_025766-RA 10 LPPGFRFYPSDEELVCHYLYKKIAKEGVSK-GTMVEVDLHTCEPWQLPEVAKLGANEWYFFSFRDRKYATGLRTNRATTSGYWKATGKDRPVFDQt 104 79***********************988.88***********8888899***********************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ vg++ktLvfy++rap+g kt W+mhe+rle NNU_025766-RA 105 SRVIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 55669************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-61	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.748	10	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGLRDIEATL PPGFRFYPSD EELVCHYLYK KIAKEGVSKG TMVEVDLHTC EPWQLPEVAK 60 LGANEWYFFS FRDRKYATGL RTNRATTSGY WKATGKDRPV FDQTSRVIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLENP HMPPKEDWVL CRVFYKGKGE RLTEPSLANE LESTFGAPSP 180 TFASSPTNHH NISSGFKQFD SFSSSVYHQE HSFLNLAMMN SNFLECPQEM NNTPMIEVDS 240 RGADEFGFLL DMSLEENHLG DGGPPCLDEM RFEDDNTIVF I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-48	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-48	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-48	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-48	1	156	4	165	NO APICAL MERISTEM PROTEIN
3ulx_A	2e-48	1	156	1	168	Stress-induced transcription factor NAC1
4dul_A	3e-48	1	156	4	165	NAC domain-containing protein 19
4dul_B	3e-48	1	156	4	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246799.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	8e-65	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A1U7Z3Q6	0.0	A0A1U7Z3Q6_NELNU; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_010246799.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	5e-86	NAC domain containing protein 74

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]