PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_025757-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 635aa MW: 72491.4 Da PI: 8.8754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.8e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l NNU_025757-RA 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33.5 | 9.5e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l NNU_025757-RA 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 5 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 2.9E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 9.99E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 4.31E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 4.45E-30 | 55 | 106 | No hit | No description |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-14 | 58 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.6E-55 | 407 | 630 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPSDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIETRQR KRKRKGIDYN AEIPFEKKPP PGFFDVTDEE RAVEQPKFPT 240 TIEELEGKRR VDIEAQLRKQ DIAKNKIAQR QDAPSSILQV NRLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLL AGNEEIAEGS GATRALLANY SQTPRQGMTP MRTPQRTPSG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKRDIQTPNP MATPLSTPGP 420 MGLTPRIGMT PSRDGYSFGM TPKGTPIRDE LHINEDMDVX DNAKLEQRRQ AELRRNLRSG 480 LSNLPQPKNE YQIVVQPVPE ENEEPEDKIE EDMSDRIARE KAEEEARQQA LLRKRSKVLQ 540 RELPRPPAAS LDLIRKSLMR SDEDKSSFVP PTLIEQADEM IRKELLVLLE HDNAKYPLDV 600 EKEKKKGAKR GKSSIAVPEI EDLEETELKE VGFLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 613 | 3 | 602 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIETRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010246794.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1U7Z3Q2 | 0.0 | A0A1U7Z3Q2_NELNU; cell division cycle 5-like protein | ||||
STRING | XP_010246794.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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