PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_025385-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 23764.9 Da PI: 10.3351 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++++G g W++++ + g++R++k+c++rw++yl NNU_025385-RA 10 KGSWTREEDALLRXCIEKYGEGKWHLVPXRAGLRRCRKSCRLRWLNYL 57 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 27.1 | 1e-08 | 67 | 89 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 tW++Ia +++ gRt++++k++w+k NNU_025385-RA 67 TWSLIAGRLP-GRTANDIKNYWNK 89 8*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.147 | 5 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-22 | 8 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.79E-21 | 10 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-11 | 12 | 57 | No hit | No description |
Pfam | PF00249 | 2.8E-6 | 67 | 89 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.424 | 68 | 91 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-9 | 69 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEGRSLGLIK GSWTREEDAL LRXCIEKYGE GKWHLVPXRA GLRRCRKSCR LRWLNYLKPD 60 IKREKFTWSL IAGRLPGRTA NDIKNYWNKS SISSSSSTLG RFHAVMVFDI FLLSFKAISS 120 LADFEEQAEL LALGRANTRQ SSPLSRVVAN PSVHLGGIEG LPVEGRKNQQ CPKAMTSPLS 180 STTVVDGTTL GTMVDDLAAT APILGLWTNA TPLPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 8 | 98 | 5 | 110 | B-MYB |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019051920.1 | 2e-54 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | A0A1U8Q1K8 | 5e-53 | A0A1U8Q1K8_NELNU; transcription factor MYB114-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 4e-46 | myb domain protein 114 |