PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025342-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 275aa MW: 31951.1 Da PI: 7.0718

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025342-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.6	3.1e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ ++ weF+++ F+kg+k+ll++i NNU_025342-RA 25 FLTKTYQLVDDPRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEFFRKGEKHLLSEI 111 9**************************************************************999.........*************** PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 +r+k++ NNU_025342-RA 112 HRRKTS 117 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.0E-57	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.68E-34	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.4E-38	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.0E-19	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-31	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MLFMVERCEE MVLSVDYHKA VPAPFLTKTY QLVDDPRTDH IVSWGEDETT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFKKIVA DRWEFANEFF RKGEKHLLSE IHRRKTSQSS 120 QQHQQHNIDP TTQFLNPDEN GGWIEPAPLP PSNRESDFLS VLTEDNQRLR KRNFMLLSEL 180 THMKKLYNDI IYFLQNHVKP VAPDQRSTSS GPKLIEIAPS FQSQTLLSFQ TFKTCGTSSC 240 SVTLTEEPNN TVKLFGVSLS GKKRLHPEKI DPEES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-22	21	119	17	125	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246178.1	0.0	PREDICTED: heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	2e-94	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A1U7Z261	0.0	A0A1U7Z261_NELNU; heat stress transcription factor B-4b-like
STRING	XP_010246178.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-89	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]