PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025260-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 544aa    MW: 60167.4 Da    PI: 6.6104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025260-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  NNU_025260-RA  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                   ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11545No hitNo description
CDDcd002025.64E-17654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.0E-13741IPR000679Zinc finger, GATA-type
PfamPF139192.7E-6287367IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RVEPDDYDDY  60
RAPKVKSIPI KAKDAKFHKR RQSHDNMVAE REAPECDQNF RKAIEEDTSN RSSSGSAISY  120
SESCAQFGGT EASDLTGPPQ STVWDTLVPS RKRTCVSRPK PSSVEKLTKD LCSILHEQQS  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSI LIKHPSAVAR EEESEASSLS VDNKSCLVHE  240
GYSGSASVLV HNGNKGVYFP SLGKEKLKKS TGQDTQRDLT KRDKELIEKS QILRHHNSLL  300
RSISLEDVID FEEFVNHLTH EDQKQLMKFL PSIDTARLPD SLKSMFDSPQ FKENLSSFQQ  360
LLAEGVFDLS FPGGTTEDCK TLKRLVLVNL TKSKWVEHYN LLKDVKRKKV TEGKGAAIGT  420
GVLGSSELST VKRSCGGQNQ NFPEPQNIMS PKRVMKASYF TKDNIESDGS CFSPSSLFAF  480
PPDGSSFMFD SFQFTDDSSD QDLLLDVPSN GSFPQAELLP PSSSFVVQQA STSSSTVFPH  540
LIHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246097.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-145GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1U7Z1Z70.0A0A1U7Z1Z7_NELNU; GATA transcription factor 26-like
STRINGXP_010246097.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-138GATA transcription factor 26