PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024995-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 406aa    MW: 45251.9 Da    PI: 7.9658
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024995-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-221563149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   kri+ +  rqvtfskRr g++KKA+EL++LC+ae a+i+fs+ gk + +
  NNU_024995-RA 15 KRIDREDSRQVTFSKRRSGLFKKASELCTLCGAESALIVFSPAGKAFSF 63
                   799999**************************************97766 PP
2SRF-TF64.61e-20208255249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                    +i +k + +vtfskRr+g++ KA EL++LC+aevavi+fs+ gk + +
  NNU_024995-RA 208 KITDKDRLHVTFSKRRAGLFNKACELCILCGAEVAVIVFSPAGKAFSF 255
                    68999**************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-34766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.857767IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-28778IPR002100Transcription factor, MADS-box
CDDcd002656.03E-35875No hitNo description
PRINTSPR004041.9E-20929IPR002100Transcription factor, MADS-box
PfamPF003199.3E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-204465IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-30199258IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.493199259IPR002100Transcription factor, MADS-box
CDDcd002651.08E-29200273No hitNo description
SuperFamilySSF554552.75E-24200274IPR002100Transcription factor, MADS-box
PfamPF003198.5E-23208255IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMKKTSMGRQ KIEIKRIDRE DSRQVTFSKR RSGLFKKASE LCTLCGAESA LIVFSPAGKA  60
FSFGHPSVDS ILDRFFTQDI PPEDSDGVSS SLPEGHRGGI IYELNRQYTE AFNKLEAEKK  120
RAQMLKQISK PNQIQSWWEA PIENLSLHEL EQLKLIMKEL KHSVAKRGNE LLMDSSSQSP  180
FLAFNSLSMV DPFEKRHSLG RRKIQIAKIT DKDRLHVTFS KRRAGLFNKA CELCILCGAE  240
VAVIVFSPAG KAFSFGHPFV DCVLDRFLSQ SSAPEICSHP LVNAKSGAGA MSECSQRYMA  300
VLSQLEALKM GGETTLDPLS TGQFWWDSPI GNLGLHELEK FRAALEELKK NLIMRMNELL  360
IGSSSQSGAF FNENCGEVID DPLAFLTPNY FSPIGPFDFG SGYGPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15798195MEF2 CHIMERA
6byy_B2e-15798195MEF2 CHIMERA
6byy_C2e-15798195MEF2 CHIMERA
6byy_D2e-15798195MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245648.11e-156PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U7ZE101e-155A0A1U7ZE10_NELNU; agamous-like MADS-box protein AGL61
STRINGXP_010245648.11e-156(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-48AGAMOUS-like 62