PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_024939-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33509.7 Da PI: 8.1586 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.9 | 1.2e-33 | 62 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+P+d+el+ e+L++kv+++ + + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ NNU_024939-RA 62 LPAGVKFDPSDQELL-EHLEAKVRSDMhrlhplI---DefipTLEGEnGICYTHPEKLP-GVNKDGLSRHFFHRPSKAYTTGTRKRRKVHtdadgs 152 799************.99******9995554332...132222333336**********.666777799******************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y++ NNU_024939-RA 153 ETRWHKTGKTRPVFV-GGRLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHI 202 788************.9*************6657999999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-38 | 57 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.018 | 62 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-15 | 63 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTWCNECDDD TNTRAIQISS ILPPDLLNDR VLPQDRRFII CPSCGHRIQS QDQAGIPDLP 60 GLPAGVKFDP SDQELLEHLE AKVRSDMHRL HPLIDEFIPT LEGENGICYT HPEKLPGVNK 120 DGLSRHFFHR PSKAYTTGTR KRRKVHTDAD GSETRWHKTG KTRPVFVGGR LKGYKKILVL 180 YTNYGKQRKP EKTNWVMHQY HIGNNEEEKD GELVVSKVFY QTQPRQCSSI VKEGLSGKSK 240 GVIGHESSSF RDASSLVEYY NSPFFSYDQS GHNRESPPQL IPNFVLHPDG SSFLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245577.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like isoform X1 | ||||
Refseq | XP_010245578.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | O49459 | 1e-118 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1U7ZCG2 | 0.0 | A0A1U7ZCG2_NELNU; NAC domain-containing protein 73-like isoform X1 | ||||
TrEMBL | A0A1U7ZDV1 | 0.0 | A0A1U7ZDV1_NELNU; NAC domain-containing protein 73-like isoform X2 | ||||
STRING | XP_010245577.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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