PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024939-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 295aa    MW: 33509.7 Da    PI: 8.1586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024939-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-33622021128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                    lp+G++F+P+d+el+ e+L++kv+++       +   +    +++   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+++      
  NNU_024939-RA  62 LPAGVKFDPSDQELL-EHLEAKVRSDMhrlhplI---DefipTLEGEnGICYTHPEKLP-GVNKDGLSRHFFHRPSKAYTTGTRKRRKVHtdadgs 152
                    799************.99******9995554332...132222333336**********.666777799******************744446555 PP

            NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y++
  NNU_024939-RA 153 ETRWHKTGKTRPVFV-GGRLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHI 202
                    788************.9*************6657999999*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3857221IPR003441NAC domain
PROSITE profilePS5100534.01862221IPR003441NAC domain
PfamPF023653.9E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTWCNECDDD TNTRAIQISS ILPPDLLNDR VLPQDRRFII CPSCGHRIQS QDQAGIPDLP  60
GLPAGVKFDP SDQELLEHLE AKVRSDMHRL HPLIDEFIPT LEGENGICYT HPEKLPGVNK  120
DGLSRHFFHR PSKAYTTGTR KRRKVHTDAD GSETRWHKTG KTRPVFVGGR LKGYKKILVL  180
YTNYGKQRKP EKTNWVMHQY HIGNNEEEKD GELVVSKVFY QTQPRQCSSI VKEGLSGKSK  240
GVIGHESSSF RDASSLVEYY NSPFFSYDQS GHNRESPPQL IPNFVLHPDG SSFLP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245577.10.0PREDICTED: NAC domain-containing protein 73-like isoform X1
RefseqXP_010245578.10.0PREDICTED: NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1U7ZCG20.0A0A1U7ZCG2_NELNU; NAC domain-containing protein 73-like isoform X1
TrEMBLA0A1U7ZDV10.0A0A1U7ZDV1_NELNU; NAC domain-containing protein 73-like isoform X2
STRINGXP_010245577.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]