PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024740-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 316aa MW: 34275.9 Da PI: 6.7713

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024740-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109	2.4e-34	42	98	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC stntkfCyynny+ sqPr+fCkaC+r+Wt+GG+lrnvPvGgg ++++ NNU_024740-RA 42 PTPLKCPRCGSTNTKFCYYNNYNRSQPRHFCKACKRHWTNGGTLRNVPVGGGHKNKR 98 5679************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.6E-30	44	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.13	45	99	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	45	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGLSSKQVSV DGLELDWGGH SLLQAGALDL PKPPEVTQQQ QPTPLKCPRC GSTNTKFCYY 60 NNYNRSQPRH FCKACKRHWT NGGTLRNVPV GGGHKNKRLK TTPTTTTASN SATTTTTTSN 120 TGRLSCSTNN NIAIQAQQKL QLQEGHLPLA LGDSKSISDI LYQALLHPPS SSSSLLLSSQ 180 TGYSSKVSNN EDSDIVNINS NSLLDSTLSL PPTPSFPYTS LSSFDNNPSS ISSSFIRGFQ 240 PSNVYSGYTG EAETAEDSTI TTTTITTTNT SLPMTPPWQV PVTSGFMDSM GYWSWDDLTS 300 FVTADLKQPW EDTQQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245314.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U7Z3K3	0.0	A0A1U7Z3K3_NELNU; dof zinc finger protein DOF1.4-like
STRING	XP_010245314.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-27	Dof family protein