PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024675-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 510aa MW: 55898.2 Da PI: 4.6746

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024675-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.5	1.6e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i NNU_024675-RA 25 FLSKTYDMVDDPSTNSIVSWSPSNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTI 111 9******************999*************************************999.........*************** PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 +r+k + NNU_024675-RA 112 NRRKPS 117 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.0E-41	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.18E-36	20	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-65	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-20	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-32	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-20	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-20	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MDGVQSTTTI ASSSSAPNAN APPPFLSKTY DMVDDPSTNS IVSWSPSNNS FVVWNPPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT INRRKPSHIH 120 HQQQPQGQNS SVAACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQA TDHQLQTMGQ 180 RLQGMEQRQQ QMMSFLAKAV QSPGFLAQLV QQQSDSNRCI SGVNKKRRLP KQEVNSEGEH 240 AAAPDGQIIK YQPLMNEAAK AMLRQILKFD SSPRLESSNG NPDSFLIDNV PSPSNALDSG 300 SSSSRISGVT LSEVPPTSGQ SFLPAASEFT GIRPSAAITE IQSSSSLVTD MVTSTQFADM 360 SVMSGVEEVA SCQPDMVIPQ IQGMISEPSA VDIPGNYVGT ETGNGVYMDP LSVGLDTTMP 420 IETDKFSPDP DLDIFIDGSK LPGINDAFWE QFLTASPMSG DTEEIDSSTP EGASKEKDGH 480 SGQENGWDKA QHMDQLTEQM GLLTSDTKGG

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MDGVQSTTTI ASSSSAPNAN APPPFLSKTY DMVDDPSTNS IVSWSPSNNS FVVWNPPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT INRRKPSHIH  120
HQQQPQGQNS SVAACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQA TDHQLQTMGQ  180
RLQGMEQRQQ QMMSFLAKAV QSPGFLAQLV QQQSDSNRCI SGVNKKRRLP KQEVNSEGEH  240
AAAPDGQIIK YQPLMNEAAK AMLRQILKFD SSPRLESSNG NPDSFLIDNV PSPSNALDSG  300
SSSSRISGVT LSEVPPTSGQ SFLPAASEFT GIRPSAAITE IQSSSSLVTD MVTSTQFADM  360
SVMSGVEEVA SCQPDMVIPQ IQGMISEPSA VDIPGNYVGT ETGNGVYMDP LSVGLDTTMP  420
IETDKFSPDP DLDIFIDGSK LPGINDAFWE QFLTASPMSG DTEEIDSSTP EGASKEKDGH  480
SGQENGWDKA QHMDQLTEQM GLLTSDTKGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-28	16	114	17	129	Heat shock factor protein 1
5d5v_B	4e-28	16	114	17	129	Heat shock factor protein 1
5d5v_D	4e-28	16	114	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245198.1	0.0	PREDICTED: heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1U7ZBI8	0.0	A0A1U7ZBI8_NELNU; heat stress transcription factor A-1
STRING	XP_010245198.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-128	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]